miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13366 3' -61.5 NC_003409.1 + 60764 0.67 0.615629
Target:  5'- aCCaGUCGAGGCauauACUCCUGCCaGUCGaacgagGCc -3'
miRNA:   3'- -GG-CGGCUCCG----UGGGGAUGG-CAGCg-----CG- -5'
13366 3' -61.5 NC_003409.1 + 125624 0.67 0.614653
Target:  5'- gCUGCUGuGGCuccugcugcugugGCUCCUGCUGUUGUGg -3'
miRNA:   3'- -GGCGGCuCCG-------------UGGGGAUGGCAGCGCg -5'
13366 3' -61.5 NC_003409.1 + 125794 0.67 0.614653
Target:  5'- gCUGCUGuGGCuccugcugcugugGCUCCUGCUGUUGUGg -3'
miRNA:   3'- -GGCGGCuCCG-------------UGGGGAUGGCAGCGCg -5'
13366 3' -61.5 NC_003409.1 + 68450 0.67 0.605874
Target:  5'- uUCGCCGAGGaCACgCC-AUCGcCGCcaGCa -3'
miRNA:   3'- -GGCGGCUCC-GUGgGGaUGGCaGCG--CG- -5'
13366 3' -61.5 NC_003409.1 + 59260 0.67 0.605874
Target:  5'- aCGCCGAGuGCggcauacauGCCUCUGgcgaCGUCgGCGCc -3'
miRNA:   3'- gGCGGCUC-CG---------UGGGGAUg---GCAG-CGCG- -5'
13366 3' -61.5 NC_003409.1 + 125738 0.67 0.605874
Target:  5'- gCUGCUGuGGCccugcugcugugGCUCCUGCUGUUGUGg -3'
miRNA:   3'- -GGCGGCuCCG------------UGGGGAUGGCAGCGCg -5'
13366 3' -61.5 NC_003409.1 + 88009 0.67 0.597109
Target:  5'- aCGCCGGGGgauacggggcaacuaGCCCCU-CCcaUGCGCg -3'
miRNA:   3'- gGCGGCUCCg--------------UGGGGAuGGcaGCGCG- -5'
13366 3' -61.5 NC_003409.1 + 132933 0.68 0.586423
Target:  5'- aCCGCCGccuucacGGCAUCCggACCGgcCGCGg -3'
miRNA:   3'- -GGCGGCu------CCGUGGGgaUGGCa-GCGCg -5'
13366 3' -61.5 NC_003409.1 + 55854 0.68 0.547928
Target:  5'- gUCGCCGAcauuGaCGCCCUggucgacGCCGUCGCGa -3'
miRNA:   3'- -GGCGGCUc---C-GUGGGGa------UGGCAGCGCg -5'
13366 3' -61.5 NC_003409.1 + 33815 0.69 0.528972
Target:  5'- gUCGCgCGAGGgCACCCaaACCGcCGCu- -3'
miRNA:   3'- -GGCG-GCUCC-GUGGGgaUGGCaGCGcg -5'
13366 3' -61.5 NC_003409.1 + 51830 0.69 0.519584
Target:  5'- aCGCCGGacccGGCACucaCCCguggACCGUUGCa- -3'
miRNA:   3'- gGCGGCU----CCGUG---GGGa---UGGCAGCGcg -5'
13366 3' -61.5 NC_003409.1 + 110013 0.69 0.482738
Target:  5'- gCGCCG-GGCGCCaCCgccucCCGcCGCGg -3'
miRNA:   3'- gGCGGCuCCGUGG-GGau---GGCaGCGCg -5'
13366 3' -61.5 NC_003409.1 + 112770 0.71 0.421522
Target:  5'- aCCGCCGAGcgcaacGCGCCCgCUuggcaaggGCCG-CGCGg -3'
miRNA:   3'- -GGCGGCUC------CGUGGG-GA--------UGGCaGCGCg -5'
13366 3' -61.5 NC_003409.1 + 112595 0.71 0.413163
Target:  5'- cCCGacugCGAGGCugCCCUauuaaagcACCGUgacgGCGCg -3'
miRNA:   3'- -GGCg---GCUCCGugGGGA--------UGGCAg---CGCG- -5'
13366 3' -61.5 NC_003409.1 + 125489 0.71 0.413163
Target:  5'- gCUGCUGGGGCuCCCgCUGCUGUgGCu- -3'
miRNA:   3'- -GGCGGCUCCGuGGG-GAUGGCAgCGcg -5'
13366 3' -61.5 NC_003409.1 + 107522 0.71 0.395945
Target:  5'- aCGCCGuGGUucGCCCCUuccggcgGCCGUggguccaGCGCu -3'
miRNA:   3'- gGCGGCuCCG--UGGGGA-------UGGCAg------CGCG- -5'
13366 3' -61.5 NC_003409.1 + 103790 0.72 0.372943
Target:  5'- cCCGCCaGccGC-CCCCUGCCGUUGUcccuGCa -3'
miRNA:   3'- -GGCGG-CucCGuGGGGAUGGCAGCG----CG- -5'
13366 3' -61.5 NC_003409.1 + 111859 0.72 0.365224
Target:  5'- aCCGCgGGGGCGgCCgUuuCCGUCGUGg -3'
miRNA:   3'- -GGCGgCUCCGUgGGgAu-GGCAGCGCg -5'
13366 3' -61.5 NC_003409.1 + 77597 0.72 0.334747
Target:  5'- aCCGCCGAGGC-UCCaaGCCGUcuauccaacguucCGCGUu -3'
miRNA:   3'- -GGCGGCUCCGuGGGgaUGGCA-------------GCGCG- -5'
13366 3' -61.5 NC_003409.1 + 102827 0.73 0.31365
Target:  5'- gCUGCCGAGGCggcaaccgggcucAUCCCUGCCag-GCGCc -3'
miRNA:   3'- -GGCGGCUCCG-------------UGGGGAUGGcagCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.