Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13367 | 3' | -56.6 | NC_003409.1 | + | 4834 | 0.68 | 0.784996 |
Target: 5'- ---cAugGGCAuCUCGGaGgGCGGCGAu -3' miRNA: 3'- ucauUugCUGUcGAGCC-CgCGCCGCU- -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 3008 | 0.72 | 0.545114 |
Target: 5'- gGGaAAGCGACAGaa-GGGgGCGGCGu -3' miRNA: 3'- -UCaUUUGCUGUCgagCCCgCGCCGCu -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 67791 | 0.72 | 0.545114 |
Target: 5'- aGGUcGACGAUcGCggUGGGUGCGGCGc -3' miRNA: 3'- -UCAuUUGCUGuCGa-GCCCGCGCCGCu -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 33645 | 0.71 | 0.60584 |
Target: 5'- aGGUucAAGCGGCGGUUUGGGUGCccucgcGCGAc -3' miRNA: 3'- -UCA--UUUGCUGUCGAGCCCGCGc-----CGCU- -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 35366 | 0.71 | 0.626313 |
Target: 5'- --gGAGCGGacuCGGUg-GGGCGCGGCGGa -3' miRNA: 3'- ucaUUUGCU---GUCGagCCCGCGCCGCU- -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 41989 | 0.7 | 0.646804 |
Target: 5'- uGUGAGCGAUGGCac-GGCGCaGCGAg -3' miRNA: 3'- uCAUUUGCUGUCGagcCCGCGcCGCU- -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 87169 | 0.69 | 0.717703 |
Target: 5'- gGGUGGuGCGcCGGCggaGGGCGUGGCcGAc -3' miRNA: 3'- -UCAUU-UGCuGUCGag-CCCGCGCCG-CU- -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 6400 | 0.69 | 0.737435 |
Target: 5'- gGGUGccAugGACGGCcgaGGGUGUGGCc- -3' miRNA: 3'- -UCAU--UugCUGUCGag-CCCGCGCCGcu -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 93360 | 0.68 | 0.765374 |
Target: 5'- --gAAACuuCAGCUgcggaggauguugUGGGCGUGGCGAc -3' miRNA: 3'- ucaUUUGcuGUCGA-------------GCCCGCGCCGCU- -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 15822 | 1.09 | 0.002397 |
Target: 5'- uAGUAAACGACAGCUCGGGCGCGGCGAg -3' miRNA: 3'- -UCAUUUGCUGUCGAGCCCGCGCCGCU- -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 88689 | 0.66 | 0.883187 |
Target: 5'- -----cCGGCAgGCagGGGCGCGGgGGc -3' miRNA: 3'- ucauuuGCUGU-CGagCCCGCGCCgCU- -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 87366 | 0.66 | 0.883187 |
Target: 5'- uGUAAcAUGAUGGUUucgcauaccCGGGCGCGGgGGc -3' miRNA: 3'- uCAUU-UGCUGUCGA---------GCCCGCGCCgCU- -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 45930 | 0.67 | 0.829121 |
Target: 5'- cGGUGGuACGGCGcgagguacGUUCGGaCGCGGUGAc -3' miRNA: 3'- -UCAUU-UGCUGU--------CGAGCCcGCGCCGCU- -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 29926 | 0.67 | 0.829121 |
Target: 5'- gGGUAAAUGACAa--UGGGCGCuuGGUGAc -3' miRNA: 3'- -UCAUUUGCUGUcgaGCCCGCG--CCGCU- -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 35917 | 0.66 | 0.861245 |
Target: 5'- uGUAggUGACcGCUCaGGGa-CGGCGGc -3' miRNA: 3'- uCAUuuGCUGuCGAG-CCCgcGCCGCU- -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 114394 | 0.66 | 0.845572 |
Target: 5'- ---uGGCGACAGCg-GGGUGgGGCu- -3' miRNA: 3'- ucauUUGCUGUCGagCCCGCgCCGcu -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 87590 | 0.66 | 0.853509 |
Target: 5'- -----cCGACAaauguucccGCUUGGGCguGCGGCGGa -3' miRNA: 3'- ucauuuGCUGU---------CGAGCCCG--CGCCGCU- -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 104818 | 0.68 | 0.766321 |
Target: 5'- cGGUAAcaaaggacGCGGCGGaaagaCGGGaCGUGGCGGa -3' miRNA: 3'- -UCAUU--------UGCUGUCga---GCCC-GCGCCGCU- -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 15128 | 0.67 | 0.811953 |
Target: 5'- ----cGCGACGGUagGGGUGCcucGGCGGa -3' miRNA: 3'- ucauuUGCUGUCGagCCCGCG---CCGCU- -5' |
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13367 | 3' | -56.6 | NC_003409.1 | + | 113232 | 0.68 | 0.772915 |
Target: 5'- cGGUGuggcuGCGACcgaagacgguaacgGGCUCGGGauaGgGGCGGc -3' miRNA: 3'- -UCAUu----UGCUG--------------UCGAGCCCg--CgCCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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