miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13367 5' -54.1 NC_003409.1 + 100018 0.66 0.93589
Target:  5'- -cCCG-CAgaCACCUGAGacCCGCGUCGc -3'
miRNA:   3'- aaGGCaGUaaGUGGGCUC--GGUGUAGC- -5'
13367 5' -54.1 NC_003409.1 + 7738 0.67 0.901272
Target:  5'- -gCCG-CGUUCGCCCaagcauccGGCCAgGUCGa -3'
miRNA:   3'- aaGGCaGUAAGUGGGc-------UCGGUgUAGC- -5'
13367 5' -54.1 NC_003409.1 + 115501 0.68 0.865729
Target:  5'- -aCCGgaacuaGCCCGGGCCACAUUc -3'
miRNA:   3'- aaGGCaguaagUGGGCUCGGUGUAGc -5'
13367 5' -54.1 NC_003409.1 + 116607 0.68 0.865729
Target:  5'- -aCCGUCg--CACCCGGccGCUGCGUCu -3'
miRNA:   3'- aaGGCAGuaaGUGGGCU--CGGUGUAGc -5'
13367 5' -54.1 NC_003409.1 + 81389 0.69 0.824696
Target:  5'- cUCCaUCAcUC-CCCGGGCCACAgCGc -3'
miRNA:   3'- aAGGcAGUaAGuGGGCUCGGUGUaGC- -5'
13367 5' -54.1 NC_003409.1 + 119664 0.7 0.797811
Target:  5'- -cCCGUCAaUCAaaguuuUCCGAGCCGcCAUUGg -3'
miRNA:   3'- aaGGCAGUaAGU------GGGCUCGGU-GUAGC- -5'
13367 5' -54.1 NC_003409.1 + 23345 0.7 0.797811
Target:  5'- -cCCGUCAaUCAaaguuuUCCGAGCCGcCAUUGg -3'
miRNA:   3'- aaGGCAGUaAGU------GGGCUCGGU-GUAGC- -5'
13367 5' -54.1 NC_003409.1 + 44432 0.7 0.788523
Target:  5'- cUCCGUgGUUacgagCGCUuuuUGGGCCACAUCGg -3'
miRNA:   3'- aAGGCAgUAA-----GUGG---GCUCGGUGUAGC- -5'
13367 5' -54.1 NC_003409.1 + 15860 1.06 0.00549
Target:  5'- aUUCCGUCAUUCACCCGAGCCACAUCGu -3'
miRNA:   3'- -AAGGCAGUAAGUGGGCUCGGUGUAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.