miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13368 5' -43.8 NC_003409.1 + 125693 0.67 0.999995
Target:  5'- cCUGCUGCUGUGGCUccugcuguuGUGGCu------ -3'
miRNA:   3'- -GGUGACGACAUUGA---------CACUGuauaaaa -5'
13368 5' -43.8 NC_003409.1 + 134568 0.68 0.999927
Target:  5'- cCCGacaacCUGUGACUGcGACAUAUUUg -3'
miRNA:   3'- -GGUgac--GACAUUGACaCUGUAUAAAa -5'
13368 5' -43.8 NC_003409.1 + 125531 0.7 0.999408
Target:  5'- cCUGCUGCUGUGgcuccugcuGCUGUGGCu------ -3'
miRNA:   3'- -GGUGACGACAU---------UGACACUGuauaaaa -5'
13368 5' -43.8 NC_003409.1 + 125791 0.7 0.999408
Target:  5'- cCUGCUGCUGUGgcuccugcuGCUGUGGCu------ -3'
miRNA:   3'- -GGUGACGACAU---------UGACACUGuauaaaa -5'
13368 5' -43.8 NC_003409.1 + 125621 0.7 0.999408
Target:  5'- cCUGCUGCUGUGgcuccugcuGCUGUGGCu------ -3'
miRNA:   3'- -GGUGACGACAU---------UGACACUGuauaaaa -5'
13368 5' -43.8 NC_003409.1 + 125591 0.7 0.999408
Target:  5'- cCUGCUGCUGUGgcuccugcuGCUGUGGCu------ -3'
miRNA:   3'- -GGUGACGACAU---------UGACACUGuauaaaa -5'
13368 5' -43.8 NC_003409.1 + 125561 0.7 0.999408
Target:  5'- cCUGCUGCUGUGgcuccugcuGCUGUGGCu------ -3'
miRNA:   3'- -GGUGACGACAU---------UGACACUGuauaaaa -5'
13368 5' -43.8 NC_003409.1 + 125735 0.71 0.999257
Target:  5'- cCUGCUGCUGUGgcccugcuGCUGUGGCu------ -3'
miRNA:   3'- -GGUGACGACAU--------UGACACUGuauaaaa -5'
13368 5' -43.8 NC_003409.1 + 105446 0.71 0.998854
Target:  5'- aCACUGCUGgcagAGCUG-GGCcgGUUg- -3'
miRNA:   3'- gGUGACGACa---UUGACaCUGuaUAAaa -5'
13368 5' -43.8 NC_003409.1 + 125501 0.77 0.951499
Target:  5'- cCCGCUGCUGUGgcucccgcuGCUGUGGCu------ -3'
miRNA:   3'- -GGUGACGACAU---------UGACACUGuauaaaa -5'
13368 5' -43.8 NC_003409.1 + 125456 0.77 0.951499
Target:  5'- cCCGCUGCUGUGgcucccgcuGCUGUGGCu------ -3'
miRNA:   3'- -GGUGACGACAU---------UGACACUGuauaaaa -5'
13368 5' -43.8 NC_003409.1 + 125426 0.77 0.951499
Target:  5'- cCCGCUGCUGUGgcucccgcuGCUGUGGCu------ -3'
miRNA:   3'- -GGUGACGACAU---------UGACACUGuauaaaa -5'
13368 5' -43.8 NC_003409.1 + 125396 0.77 0.951499
Target:  5'- cCCGCUGCUGUGgcucccgcuGCUGUGGCu------ -3'
miRNA:   3'- -GGUGACGACAU---------UGACACUGuauaaaa -5'
13368 5' -43.8 NC_003409.1 + 16720 1.09 0.037631
Target:  5'- aCCACUGCUGUAACUGUGACAUAUUUUu -3'
miRNA:   3'- -GGUGACGACAUUGACACUGUAUAAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.