miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13369 3' -48.1 NC_003409.1 + 48810 0.67 0.996475
Target:  5'- -gAGGGGUGGauaGAUUgGGCCAGGGGu -3'
miRNA:   3'- aaUUUUUAUCggaUUGA-CCGGUCCCC- -5'
13369 3' -48.1 NC_003409.1 + 35239 0.67 0.996475
Target:  5'- cUUGAGG--AGCCggcggUAGgUGGCCAGGuGGg -3'
miRNA:   3'- -AAUUUUuaUCGG-----AUUgACCGGUCC-CC- -5'
13369 3' -48.1 NC_003409.1 + 66664 0.67 0.994256
Target:  5'- gUUGGAAG-AGCC--GCUGGgUGGGGGa -3'
miRNA:   3'- -AAUUUUUaUCGGauUGACCgGUCCCC- -5'
13369 3' -48.1 NC_003409.1 + 120132 0.69 0.988182
Target:  5'- --------cGCCccucuUUGGCCAGGGGa -3'
miRNA:   3'- aauuuuuauCGGauu--GACCGGUCCCC- -5'
13369 3' -48.1 NC_003409.1 + 52151 0.69 0.986342
Target:  5'- -gGGGGGUGGCCUGuggcgugugcgcGCUGGCCccuucugugaaacAGGcGGg -3'
miRNA:   3'- aaUUUUUAUCGGAU------------UGACCGG-------------UCC-CC- -5'
13369 3' -48.1 NC_003409.1 + 31668 0.69 0.982657
Target:  5'- -------aGGCCUAAUggGGUguGGGGg -3'
miRNA:   3'- aauuuuuaUCGGAUUGa-CCGguCCCC- -5'
13369 3' -48.1 NC_003409.1 + 103026 0.7 0.978017
Target:  5'- gUGGAAGUAGgCU--CUGGCUAGcGGGc -3'
miRNA:   3'- aAUUUUUAUCgGAuuGACCGGUC-CCC- -5'
13369 3' -48.1 NC_003409.1 + 55409 0.7 0.972518
Target:  5'- --cAAAAUAGCauaauuGCgGGUCAGGGGa -3'
miRNA:   3'- aauUUUUAUCGgau---UGaCCGGUCCCC- -5'
13369 3' -48.1 NC_003409.1 + 117841 0.72 0.940657
Target:  5'- -------gGGCCacGCUGGCCAcucGGGGg -3'
miRNA:   3'- aauuuuuaUCGGauUGACCGGU---CCCC- -5'
13369 3' -48.1 NC_003409.1 + 133769 0.72 0.924251
Target:  5'- -----uGUGGCCUAGCcacgGGCUGGGGa -3'
miRNA:   3'- aauuuuUAUCGGAUUGa---CCGGUCCCc -5'
13369 3' -48.1 NC_003409.1 + 131831 0.74 0.883935
Target:  5'- --cGAGAUGGcCCUGGCcGGCUgcAGGGGa -3'
miRNA:   3'- aauUUUUAUC-GGAUUGaCCGG--UCCCC- -5'
13369 3' -48.1 NC_003409.1 + 12897 0.75 0.828857
Target:  5'- -cGGAAAUAGCCaAGCUGGCCaagauccccacccguAGGGu -3'
miRNA:   3'- aaUUUUUAUCGGaUUGACCGG---------------UCCCc -5'
13369 3' -48.1 NC_003409.1 + 18129 1.08 0.013551
Target:  5'- gUUAAAAAUAGCCUAACUGGCCAGGGGc -3'
miRNA:   3'- -AAUUUUUAUCGGAUUGACCGGUCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.