miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13369 5' -60 NC_003409.1 + 14412 0.66 0.767693
Target:  5'- aGCUUgUCGaaGUACAGGUCCaCCGCCa- -3'
miRNA:   3'- gCGGAgGGC--CAUGUUCAGG-GGUGGgg -5'
13369 5' -60 NC_003409.1 + 118451 0.66 0.767693
Target:  5'- aGCCUccucCCCGGgaaccuGGUgCCCuccuCCCCg -3'
miRNA:   3'- gCGGA----GGGCCaugu--UCAgGGGu---GGGG- -5'
13369 5' -60 NC_003409.1 + 80574 0.66 0.767693
Target:  5'- gGCCuuuucUCCCacaGU-CAAG-CCCUACCCCu -3'
miRNA:   3'- gCGG-----AGGGc--CAuGUUCaGGGGUGGGG- -5'
13369 5' -60 NC_003409.1 + 66491 0.66 0.767693
Target:  5'- aGCCUCCCac--CAuc-CCCCACCCa -3'
miRNA:   3'- gCGGAGGGccauGUucaGGGGUGGGg -5'
13369 5' -60 NC_003409.1 + 45671 0.66 0.758489
Target:  5'- cCGCCUCgCGaGaGC-GGUCCgCCACCgCg -3'
miRNA:   3'- -GCGGAGgGC-CaUGuUCAGG-GGUGGgG- -5'
13369 5' -60 NC_003409.1 + 63266 0.66 0.758489
Target:  5'- gGCCugUCCC-GUAUAc--CCCCACCCUg -3'
miRNA:   3'- gCGG--AGGGcCAUGUucaGGGGUGGGG- -5'
13369 5' -60 NC_003409.1 + 35724 0.66 0.758489
Target:  5'- uCGCCUUCCagagccccagGGUGuguGGUCgCCCuCCCCu -3'
miRNA:   3'- -GCGGAGGG----------CCAUgu-UCAG-GGGuGGGG- -5'
13369 5' -60 NC_003409.1 + 133024 0.66 0.758489
Target:  5'- gGCCggUCCgCGGcgccagcgccUGCAGGUgCCUCACCaCCg -3'
miRNA:   3'- gCGG--AGG-GCC----------AUGUUCA-GGGGUGG-GG- -5'
13369 5' -60 NC_003409.1 + 85031 0.66 0.756635
Target:  5'- aGCCagauguUCCCGGUgacccuugugacaaACAAGguuuuuuggguaucgCCCCaggcGCCCCa -3'
miRNA:   3'- gCGG------AGGGCCA--------------UGUUCa--------------GGGG----UGGGG- -5'
13369 5' -60 NC_003409.1 + 112015 0.66 0.74918
Target:  5'- gGCCUCgaaggcaCGGUGaacGUCCCCGCgUCg -3'
miRNA:   3'- gCGGAGg------GCCAUguuCAGGGGUGgGG- -5'
13369 5' -60 NC_003409.1 + 97762 0.66 0.74918
Target:  5'- -uCCUCCgGGUuuuUAGGUCCggguaaccaCGCCCCa -3'
miRNA:   3'- gcGGAGGgCCAu--GUUCAGGg--------GUGGGG- -5'
13369 5' -60 NC_003409.1 + 124092 0.66 0.746368
Target:  5'- gGCCUUCCaGUuuggaggaguaaagGCAGG-CCCCguguccugcuuGCCCCa -3'
miRNA:   3'- gCGGAGGGcCA--------------UGUUCaGGGG-----------UGGGG- -5'
13369 5' -60 NC_003409.1 + 108884 0.66 0.739774
Target:  5'- aGCUagCUGGgGCGAGUCCCUAaaCCg -3'
miRNA:   3'- gCGGagGGCCaUGUUCAGGGGUggGG- -5'
13369 5' -60 NC_003409.1 + 114571 0.66 0.739774
Target:  5'- uCGCgCUUUgGGggccUGCcAG-CCCCACCCCg -3'
miRNA:   3'- -GCG-GAGGgCC----AUGuUCaGGGGUGGGG- -5'
13369 5' -60 NC_003409.1 + 111567 0.66 0.731233
Target:  5'- aGCUgugggcagaggaaugUCCGGUGCAGuGUCCCaACCCg -3'
miRNA:   3'- gCGGa--------------GGGCCAUGUU-CAGGGgUGGGg -5'
13369 5' -60 NC_003409.1 + 113177 0.66 0.730279
Target:  5'- gGCCUCCgGGaggccUugGAGcgCgUCGCCCCu -3'
miRNA:   3'- gCGGAGGgCC-----AugUUCa-GgGGUGGGG- -5'
13369 5' -60 NC_003409.1 + 46315 0.66 0.730279
Target:  5'- uGUUUCCCGGUgaGCcGGUUUgCACgCCCg -3'
miRNA:   3'- gCGGAGGGCCA--UGuUCAGGgGUG-GGG- -5'
13369 5' -60 NC_003409.1 + 31840 0.66 0.730279
Target:  5'- aGCCaauUCCCGGUcgGCAuccaagccGUCacaCCACCCa -3'
miRNA:   3'- gCGG---AGGGCCA--UGUu-------CAGg--GGUGGGg -5'
13369 5' -60 NC_003409.1 + 59109 0.66 0.730279
Target:  5'- uGCCgcaCUCGGcgUACAgAGUCCCCagucGCUCCu -3'
miRNA:   3'- gCGGa--GGGCC--AUGU-UCAGGGG----UGGGG- -5'
13369 5' -60 NC_003409.1 + 66586 0.66 0.720705
Target:  5'- aCGCCgacacUuuGGUgACGAGuUCCuCCACUCCg -3'
miRNA:   3'- -GCGGa----GggCCA-UGUUC-AGG-GGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.