miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1337 3' -55.6 NC_001335.1 + 6057 1.08 0.001012
Target:  5'- uUUUCGACCGACGGCCACAUCGGGAACg -3'
miRNA:   3'- -AAAGCUGGCUGCCGGUGUAGCCCUUG- -5'
1337 3' -55.6 NC_001335.1 + 50608 0.8 0.107922
Target:  5'- ---aGACaUGACGGCCACGUCGGGcACg -3'
miRNA:   3'- aaagCUG-GCUGCCGGUGUAGCCCuUG- -5'
1337 3' -55.6 NC_001335.1 + 36986 0.75 0.215242
Target:  5'- ---aGGCgGucauCGGCUACAUCGGGGACa -3'
miRNA:   3'- aaagCUGgCu---GCCGGUGUAGCCCUUG- -5'
1337 3' -55.6 NC_001335.1 + 45043 0.72 0.319767
Target:  5'- -gUCGAUCccacgcccagugggaGACGGCCACGgcgUCGGGGAa -3'
miRNA:   3'- aaAGCUGG---------------CUGCCGGUGU---AGCCCUUg -5'
1337 3' -55.6 NC_001335.1 + 49951 0.71 0.392966
Target:  5'- -cUCGACCccaaGCGGCCACAUaggUGGGGc- -3'
miRNA:   3'- aaAGCUGGc---UGCCGGUGUA---GCCCUug -5'
1337 3' -55.6 NC_001335.1 + 36314 0.71 0.402155
Target:  5'- -cUCGGUCGACGGCCGaGUCuGGGAGg -3'
miRNA:   3'- aaAGCUGGCUGCCGGUgUAG-CCCUUg -5'
1337 3' -55.6 NC_001335.1 + 7150 0.7 0.41148
Target:  5'- --cUGGCUGACGGCCGCGaCGGuGAu- -3'
miRNA:   3'- aaaGCUGGCUGCCGGUGUaGCC-CUug -5'
1337 3' -55.6 NC_001335.1 + 597 0.7 0.41148
Target:  5'- ---aGGCCGGCacgaagucggucGGCCGCAgaUCGGGGAUu -3'
miRNA:   3'- aaagCUGGCUG------------CCGGUGU--AGCCCUUG- -5'
1337 3' -55.6 NC_001335.1 + 35290 0.7 0.430526
Target:  5'- -gUCGcAUCGGCGGCUggugCGGGAACa -3'
miRNA:   3'- aaAGC-UGGCUGCCGGuguaGCCCUUG- -5'
1337 3' -55.6 NC_001335.1 + 50755 0.7 0.450078
Target:  5'- -gUCGGCCGgggGCGGCgCACcUUGGGcGCg -3'
miRNA:   3'- aaAGCUGGC---UGCCG-GUGuAGCCCuUG- -5'
1337 3' -55.6 NC_001335.1 + 45691 0.7 0.450078
Target:  5'- --gCGACCGAa-GCCGCGuccaucccuUCGGGAAUg -3'
miRNA:   3'- aaaGCUGGCUgcCGGUGU---------AGCCCUUG- -5'
1337 3' -55.6 NC_001335.1 + 843 0.7 0.450078
Target:  5'- --cCGACUGccaauACGcGCCACAccagCGGGAGCg -3'
miRNA:   3'- aaaGCUGGC-----UGC-CGGUGUa---GCCCUUG- -5'
1337 3' -55.6 NC_001335.1 + 48361 0.69 0.47011
Target:  5'- gUUCGGCCGGcCGGCCGCGacaagguaCGGcgcGAGCg -3'
miRNA:   3'- aAAGCUGGCU-GCCGGUGUa-------GCC---CUUG- -5'
1337 3' -55.6 NC_001335.1 + 15125 0.69 0.490586
Target:  5'- cUUCaGCuCGACGGUCACAUCGucGGACa -3'
miRNA:   3'- aAAGcUG-GCUGCCGGUGUAGCc-CUUG- -5'
1337 3' -55.6 NC_001335.1 + 11582 0.69 0.490586
Target:  5'- cUUCuGGCCGGuCGuGCC-CAUCGGGAu- -3'
miRNA:   3'- aAAG-CUGGCU-GC-CGGuGUAGCCCUug -5'
1337 3' -55.6 NC_001335.1 + 40696 0.69 0.511467
Target:  5'- --aCG-CCGAC-GUCGCAUCGGaGAACg -3'
miRNA:   3'- aaaGCuGGCUGcCGGUGUAGCC-CUUG- -5'
1337 3' -55.6 NC_001335.1 + 29014 0.68 0.522046
Target:  5'- -aUgGGCCGGCGGCUGC--CGGuGGACa -3'
miRNA:   3'- aaAgCUGGCUGCCGGUGuaGCC-CUUG- -5'
1337 3' -55.6 NC_001335.1 + 29043 0.68 0.554256
Target:  5'- --cUGGCCGcaACGGCUACAUCGucAACg -3'
miRNA:   3'- aaaGCUGGC--UGCCGGUGUAGCccUUG- -5'
1337 3' -55.6 NC_001335.1 + 17605 0.68 0.554256
Target:  5'- ---aGGCCGAUGGCCAUcagGUUGGcGAGa -3'
miRNA:   3'- aaagCUGGCUGCCGGUG---UAGCC-CUUg -5'
1337 3' -55.6 NC_001335.1 + 20257 0.68 0.565127
Target:  5'- --cCGG-CGACGGCCAgGUCGaGGGCg -3'
miRNA:   3'- aaaGCUgGCUGCCGGUgUAGCcCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.