miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1337 3' -55.6 NC_001335.1 + 36253 0.66 0.653348
Target:  5'- -gUCGACCGAgaacCGGCCuccgacaAUC-GGAACa -3'
miRNA:   3'- aaAGCUGGCU----GCCGGug-----UAGcCCUUG- -5'
1337 3' -55.6 NC_001335.1 + 36314 0.71 0.402155
Target:  5'- -cUCGGUCGACGGCCGaGUCuGGGAGg -3'
miRNA:   3'- aaAGCUGGCUGCCGGUgUAG-CCCUUg -5'
1337 3' -55.6 NC_001335.1 + 36986 0.75 0.215242
Target:  5'- ---aGGCgGucauCGGCUACAUCGGGGACa -3'
miRNA:   3'- aaagCUGgCu---GCCGGUGUAGCCCUUG- -5'
1337 3' -55.6 NC_001335.1 + 39941 0.66 0.686375
Target:  5'- -gUCG-CaCGACGGCCuGCAgUGGGAGg -3'
miRNA:   3'- aaAGCuG-GCUGCCGG-UGUaGCCCUUg -5'
1337 3' -55.6 NC_001335.1 + 40696 0.69 0.511467
Target:  5'- --aCG-CCGAC-GUCGCAUCGGaGAACg -3'
miRNA:   3'- aaaGCuGGCUGcCGGUGUAGCC-CUUG- -5'
1337 3' -55.6 NC_001335.1 + 45043 0.72 0.319767
Target:  5'- -gUCGAUCccacgcccagugggaGACGGCCACGgcgUCGGGGAa -3'
miRNA:   3'- aaAGCUGG---------------CUGCCGGUGU---AGCCCUUg -5'
1337 3' -55.6 NC_001335.1 + 45691 0.7 0.450078
Target:  5'- --gCGACCGAa-GCCGCGuccaucccuUCGGGAAUg -3'
miRNA:   3'- aaaGCUGGCUgcCGGUGU---------AGCCCUUG- -5'
1337 3' -55.6 NC_001335.1 + 47180 0.66 0.697294
Target:  5'- --cCGACgCGGucUGGCC-CGaacUCGGGAGCg -3'
miRNA:   3'- aaaGCUG-GCU--GCCGGuGU---AGCCCUUG- -5'
1337 3' -55.6 NC_001335.1 + 47547 0.66 0.675404
Target:  5'- ---aGGgCGGUGGCCACAUC-GGAGCu -3'
miRNA:   3'- aaagCUgGCUGCCGGUGUAGcCCUUG- -5'
1337 3' -55.6 NC_001335.1 + 48361 0.69 0.47011
Target:  5'- gUUCGGCCGGcCGGCCGCGacaagguaCGGcgcGAGCg -3'
miRNA:   3'- aAAGCUGGCU-GCCGGUGUa-------GCC---CUUG- -5'
1337 3' -55.6 NC_001335.1 + 49951 0.71 0.392966
Target:  5'- -cUCGACCccaaGCGGCCACAUaggUGGGGc- -3'
miRNA:   3'- aaAGCUGGc---UGCCGGUGUA---GCCCUug -5'
1337 3' -55.6 NC_001335.1 + 50608 0.8 0.107922
Target:  5'- ---aGACaUGACGGCCACGUCGGGcACg -3'
miRNA:   3'- aaagCUG-GCUGCCGGUGUAGCCCuUG- -5'
1337 3' -55.6 NC_001335.1 + 50755 0.7 0.450078
Target:  5'- -gUCGGCCGgggGCGGCgCACcUUGGGcGCg -3'
miRNA:   3'- aaAGCUGGC---UGCCG-GUGuAGCCCuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.