miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13370 5' -62.6 NC_003409.1 + 7636 0.66 0.635167
Target:  5'- gCAGGUgGCaUCCgaguGGCCA-GAGCUCCa -3'
miRNA:   3'- gGUCCGgCGcGGG----CCGGUcCUUGAGG- -5'
13370 5' -62.6 NC_003409.1 + 12115 0.66 0.635167
Target:  5'- uCCGGccccCCGCaCCCaGGCCAGaGACUCUu -3'
miRNA:   3'- -GGUCc---GGCGcGGG-CCGGUCcUUGAGG- -5'
13370 5' -62.6 NC_003409.1 + 113464 0.66 0.614653
Target:  5'- cCCAGGCCGcCGaCCauGCUAGGGcgauaccGCgCCa -3'
miRNA:   3'- -GGUCCGGC-GC-GGgcCGGUCCU-------UGaGG- -5'
13370 5' -62.6 NC_003409.1 + 102010 0.66 0.614653
Target:  5'- cCCAGGCC-CGCCUGgaauccuuuuugaGCCgAGGuauaGACUUCa -3'
miRNA:   3'- -GGUCCGGcGCGGGC-------------CGG-UCC----UUGAGG- -5'
13370 5' -62.6 NC_003409.1 + 26092 0.66 0.605874
Target:  5'- aCCGacGGCCGCG-CCGGCCAaccGcGAACg-- -3'
miRNA:   3'- -GGU--CCGGCGCgGGCCGGU---C-CUUGagg -5'
13370 5' -62.6 NC_003409.1 + 118492 0.66 0.605874
Target:  5'- cCCGGcGCgGCGCaCC--CCAGGAAC-CCg -3'
miRNA:   3'- -GGUC-CGgCGCG-GGccGGUCCUUGaGG- -5'
13370 5' -62.6 NC_003409.1 + 118538 0.66 0.605874
Target:  5'- cCCGGcGCgGCGCaCC--CCAGGAAC-CCg -3'
miRNA:   3'- -GGUC-CGgCGCG-GGccGGUCCUUGaGG- -5'
13370 5' -62.6 NC_003409.1 + 118606 0.66 0.605874
Target:  5'- cCCGGcGCgGCGCaCC--CCAGGAAC-CCg -3'
miRNA:   3'- -GGUC-CGgCGCG-GGccGGUCCUUGaGG- -5'
13370 5' -62.6 NC_003409.1 + 103020 0.66 0.596136
Target:  5'- gUAGGCUcuggcuagcggGCGCCUGGC-AGGGAUgagCCc -3'
miRNA:   3'- gGUCCGG-----------CGCGGGCCGgUCCUUGa--GG- -5'
13370 5' -62.6 NC_003409.1 + 87888 0.66 0.596136
Target:  5'- cUCAGGgCGCGUCUGGUCucccGGAGaaagugcaUCCg -3'
miRNA:   3'- -GGUCCgGCGCGGGCCGGu---CCUUg-------AGG- -5'
13370 5' -62.6 NC_003409.1 + 38111 0.66 0.596136
Target:  5'- gCAGG-CGCGCCUGGCCucGAuugauacgaUCCu -3'
miRNA:   3'- gGUCCgGCGCGGGCCGGucCUug-------AGG- -5'
13370 5' -62.6 NC_003409.1 + 100271 0.66 0.596136
Target:  5'- -gAGGCCGCGUgUGGCCccuGGACUg- -3'
miRNA:   3'- ggUCCGGCGCGgGCCGGuc-CUUGAgg -5'
13370 5' -62.6 NC_003409.1 + 109099 0.66 0.596136
Target:  5'- gCGGGCCccGUGCCUGGaCGGGGucuGC-CCg -3'
miRNA:   3'- gGUCCGG--CGCGGGCCgGUCCU---UGaGG- -5'
13370 5' -62.6 NC_003409.1 + 87728 0.66 0.595164
Target:  5'- uCCGGGagaccagaCGCGCCCugaGGCCaccaucccgugacAGGAAgauCUCCc -3'
miRNA:   3'- -GGUCCg-------GCGCGGG---CCGG-------------UCCUU---GAGG- -5'
13370 5' -62.6 NC_003409.1 + 77596 0.66 0.585453
Target:  5'- gCCAGGCCuuCGCCCGGUcccacauCAGucACUaCCc -3'
miRNA:   3'- -GGUCCGGc-GCGGGCCG-------GUCcuUGA-GG- -5'
13370 5' -62.6 NC_003409.1 + 102842 0.67 0.576739
Target:  5'- aCCGGGCUcaucccugccagGCGCCCGcuaGCCAGaGccuACUuCCa -3'
miRNA:   3'- -GGUCCGG------------CGCGGGC---CGGUC-Cu--UGA-GG- -5'
13370 5' -62.6 NC_003409.1 + 53325 0.67 0.567092
Target:  5'- cCCAGaCUGUGUCCacuGCCAuGGACUCCg -3'
miRNA:   3'- -GGUCcGGCGCGGGc--CGGUcCUUGAGG- -5'
13370 5' -62.6 NC_003409.1 + 24737 0.67 0.561323
Target:  5'- -gGGGgCGCGCCgGggcuccuggggugcuGCCGGG-GCUCCu -3'
miRNA:   3'- ggUCCgGCGCGGgC---------------CGGUCCuUGAGG- -5'
13370 5' -62.6 NC_003409.1 + 131233 0.67 0.547928
Target:  5'- gCCAGGCCagcuaCGCCaGcGCCAGGGGaugggUCCu -3'
miRNA:   3'- -GGUCCGGc----GCGGgC-CGGUCCUUg----AGG- -5'
13370 5' -62.6 NC_003409.1 + 43778 0.67 0.547928
Target:  5'- gUAGGCCGCggGCCCGGaCAuGGcACuuUCCa -3'
miRNA:   3'- gGUCCGGCG--CGGGCCgGU-CCuUG--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.