miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13370 5' -62.6 NC_003409.1 + 20642 1.11 0.00052
Target:  5'- gCCAGGCCGCGCCCGGCCAGGAACUCCc -3'
miRNA:   3'- -GGUCCGGCGCGGGCCGGUCCUUGAGG- -5'
13370 5' -62.6 NC_003409.1 + 114451 0.73 0.26839
Target:  5'- -aGGGCCGUGCCCGcGCCucGGAgaauacgGCgUCCg -3'
miRNA:   3'- ggUCCGGCGCGGGC-CGGu-CCU-------UG-AGG- -5'
13370 5' -62.6 NC_003409.1 + 133180 0.73 0.275138
Target:  5'- gCUGGcGCCGCGgaCCGGCCuGGAGCUg- -3'
miRNA:   3'- -GGUC-CGGCGCg-GGCCGGuCCUUGAgg -5'
13370 5' -62.6 NC_003409.1 + 112154 0.72 0.294883
Target:  5'- gCCAGGCCcugcauccggcaccaCGCCCgggGGCCAGG-ACUCa -3'
miRNA:   3'- -GGUCCGGc--------------GCGGG---CCGGUCCuUGAGg -5'
13370 5' -62.6 NC_003409.1 + 56625 0.72 0.314337
Target:  5'- -aAGGacaCCGcCGCCauuaGGCCGGuGAACUCCg -3'
miRNA:   3'- ggUCC---GGC-GCGGg---CCGGUC-CUUGAGG- -5'
13370 5' -62.6 NC_003409.1 + 131706 0.72 0.314337
Target:  5'- -aGGuGCUGCGggCGGCCAGGGACUaCCg -3'
miRNA:   3'- ggUC-CGGCGCggGCCGGUCCUUGA-GG- -5'
13370 5' -62.6 NC_003409.1 + 118741 0.71 0.329021
Target:  5'- cCgGGGCCGCGCCagaGGUgAGGuggaccuagcaucccGCUCCc -3'
miRNA:   3'- -GgUCCGGCGCGGg--CCGgUCCu--------------UGAGG- -5'
13370 5' -62.6 NC_003409.1 + 92901 0.71 0.350121
Target:  5'- cCCAGGUCGC-CUaaGUCAGGAaGCUCCu -3'
miRNA:   3'- -GGUCCGGCGcGGgcCGGUCCU-UGAGG- -5'
13370 5' -62.6 NC_003409.1 + 78439 0.7 0.365224
Target:  5'- aCCGGGCUGCGCCa-GCCAcGGcuGCcCCg -3'
miRNA:   3'- -GGUCCGGCGCGGgcCGGU-CCu-UGaGG- -5'
13370 5' -62.6 NC_003409.1 + 60139 0.7 0.372943
Target:  5'- gCCAGGCgGCGCUgCGGCgGGaGAGCcaaUCUg -3'
miRNA:   3'- -GGUCCGgCGCGG-GCCGgUC-CUUG---AGG- -5'
13370 5' -62.6 NC_003409.1 + 110095 0.7 0.39433
Target:  5'- gCCAGcGCCgccagagcguuccuGCGCCUGGCCgaccAGGcGCUCg -3'
miRNA:   3'- -GGUC-CGG--------------CGCGGGCCGG----UCCuUGAGg -5'
13370 5' -62.6 NC_003409.1 + 109537 0.69 0.421523
Target:  5'- gUCAGGUCGCGCggGGCCAGcGccacCUCCc -3'
miRNA:   3'- -GGUCCGGCGCGggCCGGUC-Cuu--GAGG- -5'
13370 5' -62.6 NC_003409.1 + 86776 0.69 0.4472
Target:  5'- aUAGGCgGCGCCCgaGGuCCAGGucC-CCg -3'
miRNA:   3'- gGUCCGgCGCGGG--CC-GGUCCuuGaGG- -5'
13370 5' -62.6 NC_003409.1 + 70693 0.69 0.464792
Target:  5'- gUCAGcuGCCGCGCCCcaCCAGGAAacCCu -3'
miRNA:   3'- -GGUC--CGGCGCGGGccGGUCCUUgaGG- -5'
13370 5' -62.6 NC_003409.1 + 105177 0.68 0.490923
Target:  5'- gUCAGGCCGUGCUgggggauuggguuCGGggcCCGGGGuUUCCg -3'
miRNA:   3'- -GGUCCGGCGCGG-------------GCC---GGUCCUuGAGG- -5'
13370 5' -62.6 NC_003409.1 + 34118 0.68 0.510263
Target:  5'- aCgAGGCaaaGCgCGGCCuGGGugUCCg -3'
miRNA:   3'- -GgUCCGgcgCGgGCCGGuCCUugAGG- -5'
13370 5' -62.6 NC_003409.1 + 68096 0.68 0.510263
Target:  5'- -uGGGCC-CGUCUGGCCAGaGGcCUCg -3'
miRNA:   3'- ggUCCGGcGCGGGCCGGUC-CUuGAGg -5'
13370 5' -62.6 NC_003409.1 + 22144 0.68 0.510263
Target:  5'- aCGGGCCGUuacGCaaCGGCUAGGGGCa-- -3'
miRNA:   3'- gGUCCGGCG---CGg-GCCGGUCCUUGagg -5'
13370 5' -62.6 NC_003409.1 + 92728 0.68 0.519584
Target:  5'- cUCAGGUCGC-CUaaGUCAGGAaGCUCCu -3'
miRNA:   3'- -GGUCCGGCGcGGgcCGGUCCU-UGAGG- -5'
13370 5' -62.6 NC_003409.1 + 61754 0.68 0.519584
Target:  5'- -aGGGCC-UGCCagauGGCCGGGuuuACUCUg -3'
miRNA:   3'- ggUCCGGcGCGGg---CCGGUCCu--UGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.