miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13372 3' -56 NC_003409.1 + 128251 0.66 0.869498
Target:  5'- gGCGUGAUGGCgcagguGaGGGCAgcagAGCCCc- -3'
miRNA:   3'- -UGCGUUGCCGau----C-CCCGUa---UUGGGaa -5'
13372 3' -56 NC_003409.1 + 133703 0.66 0.869498
Target:  5'- -aGCAGCGuGCagAGGGGUAUucgcGGCCUUg -3'
miRNA:   3'- ugCGUUGC-CGa-UCCCCGUA----UUGGGAa -5'
13372 3' -56 NC_003409.1 + 108942 0.66 0.853877
Target:  5'- gACGCAGcCGGCUccGGGacaGUGGCuCCUg -3'
miRNA:   3'- -UGCGUU-GCCGAucCCCg--UAUUG-GGAa -5'
13372 3' -56 NC_003409.1 + 128044 0.66 0.845746
Target:  5'- -gGC-GCGGUUGGGGGU---GCCCg- -3'
miRNA:   3'- ugCGuUGCCGAUCCCCGuauUGGGaa -5'
13372 3' -56 NC_003409.1 + 14983 0.66 0.83741
Target:  5'- uGCGCGuuuGCGGCggAGGGccGCGU-ACCCa- -3'
miRNA:   3'- -UGCGU---UGCCGa-UCCC--CGUAuUGGGaa -5'
13372 3' -56 NC_003409.1 + 107976 0.66 0.83741
Target:  5'- -gGCAGgGaGCUccAGGGGCGU-GCCCa- -3'
miRNA:   3'- ugCGUUgC-CGA--UCCCCGUAuUGGGaa -5'
13372 3' -56 NC_003409.1 + 56026 0.67 0.820157
Target:  5'- cCGCGACGGCgucgaccaGGGCGUcaaugucggcGACCCg- -3'
miRNA:   3'- uGCGUUGCCGauc-----CCCGUA----------UUGGGaa -5'
13372 3' -56 NC_003409.1 + 8748 0.67 0.802184
Target:  5'- uGCGCAggcGCGGCgcacucgAGGGGUGacACCUUUc -3'
miRNA:   3'- -UGCGU---UGCCGa------UCCCCGUauUGGGAA- -5'
13372 3' -56 NC_003409.1 + 45174 0.67 0.80035
Target:  5'- -aGUAACGGCcacaugugcgguaUGGGGGUcgacuaucaaaacGUGGCCCUg -3'
miRNA:   3'- ugCGUUGCCG-------------AUCCCCG-------------UAUUGGGAa -5'
13372 3' -56 NC_003409.1 + 87833 0.67 0.783563
Target:  5'- cGCGCAugGG--AGGGGCuaguuGCCCc- -3'
miRNA:   3'- -UGCGUugCCgaUCCCCGuau--UGGGaa -5'
13372 3' -56 NC_003409.1 + 69469 0.67 0.783563
Target:  5'- gACGCAugguugcaacagACGGUcuuUAGGGGC---ACCCUa -3'
miRNA:   3'- -UGCGU------------UGCCG---AUCCCCGuauUGGGAa -5'
13372 3' -56 NC_003409.1 + 55232 0.68 0.774032
Target:  5'- -aGCAACGGaaGGGGGuCGUcaggaagaaGACCCUUc -3'
miRNA:   3'- ugCGUUGCCgaUCCCC-GUA---------UUGGGAA- -5'
13372 3' -56 NC_003409.1 + 52580 0.68 0.764368
Target:  5'- gGCGUGGCGGCcaAGGGGCGgggacguggcAGCUCUUa -3'
miRNA:   3'- -UGCGUUGCCGa-UCCCCGUa---------UUGGGAA- -5'
13372 3' -56 NC_003409.1 + 109844 0.68 0.75458
Target:  5'- gACGCcGCGGCgggAGGcGGUGgcGCCCg- -3'
miRNA:   3'- -UGCGuUGCCGa--UCC-CCGUauUGGGaa -5'
13372 3' -56 NC_003409.1 + 75451 0.68 0.75458
Target:  5'- -aGgGGCGGCUGGGacGGCGUcACCCc- -3'
miRNA:   3'- ugCgUUGCCGAUCC--CCGUAuUGGGaa -5'
13372 3' -56 NC_003409.1 + 15130 0.68 0.734673
Target:  5'- cGCGCGACGG-UAGGGGU---GCCUc- -3'
miRNA:   3'- -UGCGUUGCCgAUCCCCGuauUGGGaa -5'
13372 3' -56 NC_003409.1 + 67810 0.7 0.65208
Target:  5'- gUGCGGCGcGCaGGGGGCGccacgagGGCCCUUc -3'
miRNA:   3'- uGCGUUGC-CGaUCCCCGUa------UUGGGAA- -5'
13372 3' -56 NC_003409.1 + 30346 0.7 0.65208
Target:  5'- -gGCGAUGGaaacaugaaCUGGGGGCG-AGCCCUg -3'
miRNA:   3'- ugCGUUGCC---------GAUCCCCGUaUUGGGAa -5'
13372 3' -56 NC_003409.1 + 129151 0.73 0.487537
Target:  5'- cACGU--UGGCUGGGGGCAgggcaaAACCCa- -3'
miRNA:   3'- -UGCGuuGCCGAUCCCCGUa-----UUGGGaa -5'
13372 3' -56 NC_003409.1 + 22153 1.04 0.004254
Target:  5'- uACGCAACGGCUAGGGGCAUAACCCUUu -3'
miRNA:   3'- -UGCGUUGCCGAUCCCCGUAUUGGGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.