Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13372 | 5' | -55 | NC_003409.1 | + | 111346 | 0.65 | 0.94377 |
Target: 5'- uGAcgGGUGCgGCcCGCUUuucUGCGGGGGGg -3' miRNA: 3'- gCU--UCGCGaUGcGCGAA---GCGCUCUCC- -5' |
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13372 | 5' | -55 | NC_003409.1 | + | 78809 | 0.65 | 0.94377 |
Target: 5'- cCGGcuGGCGCguaACG-GCaggCGUGAGAGGc -3' miRNA: 3'- -GCU--UCGCGa--UGCgCGaa-GCGCUCUCC- -5' |
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13372 | 5' | -55 | NC_003409.1 | + | 27093 | 0.66 | 0.934258 |
Target: 5'- aGAAGCGCaccacagaaACGC-CUgucguaCGCGGGGGGu -3' miRNA: 3'- gCUUCGCGa--------UGCGcGAa-----GCGCUCUCC- -5' |
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13372 | 5' | -55 | NC_003409.1 | + | 127275 | 0.66 | 0.939134 |
Target: 5'- aCGGAGCaCcgGCGCGCccUUaaCGAGAGGa -3' miRNA: 3'- -GCUUCGcGa-UGCGCG--AAgcGCUCUCC- -5' |
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13372 | 5' | -55 | NC_003409.1 | + | 82922 | 0.66 | 0.923787 |
Target: 5'- gGAGGCcugcaaacGCUugGgGCuUUCGUG-GAGGa -3' miRNA: 3'- gCUUCG--------CGAugCgCG-AAGCGCuCUCC- -5' |
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13372 | 5' | -55 | NC_003409.1 | + | 67797 | 0.67 | 0.899967 |
Target: 5'- aCGAucGCGgUGgGUGCggCGCGcAGGGGg -3' miRNA: 3'- -GCUu-CGCgAUgCGCGaaGCGC-UCUCC- -5' |
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13372 | 5' | -55 | NC_003409.1 | + | 90532 | 0.67 | 0.906279 |
Target: 5'- gGggGgGCUGCGaguCGCUaugaCGCGucGAGGg -3' miRNA: 3'- gCuuCgCGAUGC---GCGAa---GCGCu-CUCC- -5' |
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13372 | 5' | -55 | NC_003409.1 | + | 123633 | 0.67 | 0.906279 |
Target: 5'- gCGGAGCgGCgACGgugGCUUCuaGGGAGGa -3' miRNA: 3'- -GCUUCG-CGaUGCg--CGAAGcgCUCUCC- -5' |
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13372 | 5' | -55 | NC_003409.1 | + | 75492 | 0.67 | 0.899967 |
Target: 5'- gGcuGUGCUGgGCGUUgaacgCGCgGGGAGGg -3' miRNA: 3'- gCuuCGCGAUgCGCGAa----GCG-CUCUCC- -5' |
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13372 | 5' | -55 | NC_003409.1 | + | 65514 | 0.68 | 0.879645 |
Target: 5'- aGGAGU-CUGaaaGCGCUUUGaGAGAGGg -3' miRNA: 3'- gCUUCGcGAUg--CGCGAAGCgCUCUCC- -5' |
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13372 | 5' | -55 | NC_003409.1 | + | 40948 | 0.68 | 0.85733 |
Target: 5'- uCGAuGCGC-GCGUGCUggucCGUGAGAauGGg -3' miRNA: 3'- -GCUuCGCGaUGCGCGAa---GCGCUCU--CC- -5' |
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13372 | 5' | -55 | NC_003409.1 | + | 25580 | 0.69 | 0.807362 |
Target: 5'- -aAAGCcCUACGUGUg-CGCGGGGGGg -3' miRNA: 3'- gcUUCGcGAUGCGCGaaGCGCUCUCC- -5' |
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13372 | 5' | -55 | NC_003409.1 | + | 118620 | 0.72 | 0.661595 |
Target: 5'- cCGugcCGCcGCGCGCguaaugCGCGAGGGGg -3' miRNA: 3'- -GCuucGCGaUGCGCGaa----GCGCUCUCC- -5' |
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13372 | 5' | -55 | NC_003409.1 | + | 24367 | 0.72 | 0.641088 |
Target: 5'- aCGugcCGCcGCGCGCgcagugCGCGAGGGGg -3' miRNA: 3'- -GCuucGCGaUGCGCGaa----GCGCUCUCC- -5' |
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13372 | 5' | -55 | NC_003409.1 | + | 31519 | 0.73 | 0.610294 |
Target: 5'- gGAAGCGCaa-GCGCggCGC-AGAGGa -3' miRNA: 3'- gCUUCGCGaugCGCGaaGCGcUCUCC- -5' |
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13372 | 5' | -55 | NC_003409.1 | + | 22344 | 0.78 | 0.358217 |
Target: 5'- gCGAAGCGCguaGCGCUUCGCGccGGuaaAGGg -3' miRNA: 3'- -GCUUCGCGaugCGCGAAGCGC--UC---UCC- -5' |
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13372 | 5' | -55 | NC_003409.1 | + | 22187 | 1.1 | 0.002994 |
Target: 5'- gCGAAGCGCUACGCGCUUCGCGAGAGGu -3' miRNA: 3'- -GCUUCGCGAUGCGCGAAGCGCUCUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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