miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13375 5' -58.6 NC_003409.1 + 6610 0.67 0.698606
Target:  5'- gUACCCGUAACGAuGGcaaaGGaaCUGGCGGc -3'
miRNA:   3'- aAUGGGCAUUGCU-CC----UCggGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 10025 0.67 0.728395
Target:  5'- cUGCCgGcGGCGGGGGGUCCaCGGaCAa -3'
miRNA:   3'- aAUGGgCaUUGCUCCUCGGG-GCC-GUc -5'
13375 5' -58.6 NC_003409.1 + 19175 0.66 0.742057
Target:  5'- --cCCCGUggggauaaccaggacGAgGAGGGGCCCgCGGgGGc -3'
miRNA:   3'- aauGGGCA---------------UUgCUCCUCGGG-GCCgUC- -5'
13375 5' -58.6 NC_003409.1 + 24248 1.05 0.002466
Target:  5'- uUUACCCGUAACGAGGAGCCCCGGCAGc -3'
miRNA:   3'- -AAUGGGCAUUGCUCCUCGGGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 24286 0.74 0.319296
Target:  5'- --cCCCGgcaGCaccccAGGAGCCCCGGCAGc -3'
miRNA:   3'- aauGGGCau-UGc----UCCUCGGGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 24326 0.74 0.319296
Target:  5'- --cCCCGgcaGCaccccAGGAGCCCCGGCAGc -3'
miRNA:   3'- aauGGGCau-UGc----UCCUCGGGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 24366 0.74 0.319296
Target:  5'- --cCCCGgcaGCaccccAGGAGCCCCGGCAGc -3'
miRNA:   3'- aauGGGCau-UGc----UCCUCGGGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 24406 0.74 0.319296
Target:  5'- --cCCCGgcaGCaccccAGGAGCCCCGGCAGc -3'
miRNA:   3'- aauGGGCau-UGc----UCCUCGGGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 24446 0.74 0.319296
Target:  5'- --cCCCGgcaGCaccccAGGAGCCCCGGCAGc -3'
miRNA:   3'- aauGGGCau-UGc----UCCUCGGGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 24486 0.74 0.319296
Target:  5'- --cCCCGgcaGCaccccAGGAGCCCCGGCAGc -3'
miRNA:   3'- aauGGGCau-UGc----UCCUCGGGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 24526 0.74 0.319296
Target:  5'- --cCCCGgcaGCaccccAGGAGCCCCGGCAGc -3'
miRNA:   3'- aauGGGCau-UGc----UCCUCGGGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 24555 0.72 0.432854
Target:  5'- -cACCCc-----AGGAGCCCCGGCAGc -3'
miRNA:   3'- aaUGGGcauugcUCCUCGGGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 24575 0.67 0.688553
Target:  5'- -cACCCc-----AGGAGCCCCGGCGc -3'
miRNA:   3'- aaUGGGcauugcUCCUCGGGGCCGUc -5'
13375 5' -58.6 NC_003409.1 + 26032 0.72 0.432854
Target:  5'- -gACCCGcgggcgggacgGACGAGGAGCCCaCGGaCGa -3'
miRNA:   3'- aaUGGGCa----------UUGCUCCUCGGG-GCC-GUc -5'
13375 5' -58.6 NC_003409.1 + 46360 0.66 0.785495
Target:  5'- --uCUCGcAGCGAGGAaCCCCaGCAGu -3'
miRNA:   3'- aauGGGCaUUGCUCCUcGGGGcCGUC- -5'
13375 5' -58.6 NC_003409.1 + 46768 0.73 0.365092
Target:  5'- gUGCUgGUGGCG-GGGGCCCCagcaagccuGGCAGa -3'
miRNA:   3'- aAUGGgCAUUGCuCCUCGGGG---------CCGUC- -5'
13375 5' -58.6 NC_003409.1 + 51191 0.66 0.766914
Target:  5'- --uCCCGUAcUGGGGgaGGCCCaaGGCGGg -3'
miRNA:   3'- aauGGGCAUuGCUCC--UCGGGg-CCGUC- -5'
13375 5' -58.6 NC_003409.1 + 63816 0.67 0.708603
Target:  5'- -aGCCCgGUGACGcaaAGG-GUCCCGGgAGu -3'
miRNA:   3'- aaUGGG-CAUUGC---UCCuCGGGGCCgUC- -5'
13375 5' -58.6 NC_003409.1 + 70207 0.66 0.766914
Target:  5'- aUGCCgGgguGCGcGGGGGUCCCGaGUAGu -3'
miRNA:   3'- aAUGGgCau-UGC-UCCUCGGGGC-CGUC- -5'
13375 5' -58.6 NC_003409.1 + 70893 0.71 0.460089
Target:  5'- aUACCCcuuugugGAUGuGGAGUUCCGGCGGg -3'
miRNA:   3'- aAUGGGca-----UUGCuCCUCGGGGCCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.