miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13375 5' -58.6 NC_003409.1 + 97908 0.72 0.406582
Target:  5'- -aACCCG-GAgGAGGAGUCCugcgCGGCAGa -3'
miRNA:   3'- aaUGGGCaUUgCUCCUCGGG----GCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 46768 0.73 0.365092
Target:  5'- gUGCUgGUGGCG-GGGGCCCCagcaagccuGGCAGa -3'
miRNA:   3'- aAUGGgCAUUGCuCCUCGGGG---------CCGUC- -5'
13375 5' -58.6 NC_003409.1 + 24526 0.74 0.319296
Target:  5'- --cCCCGgcaGCaccccAGGAGCCCCGGCAGc -3'
miRNA:   3'- aauGGGCau-UGc----UCCUCGGGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 24486 0.74 0.319296
Target:  5'- --cCCCGgcaGCaccccAGGAGCCCCGGCAGc -3'
miRNA:   3'- aauGGGCau-UGc----UCCUCGGGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 24446 0.74 0.319296
Target:  5'- --cCCCGgcaGCaccccAGGAGCCCCGGCAGc -3'
miRNA:   3'- aauGGGCau-UGc----UCCUCGGGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 24406 0.74 0.319296
Target:  5'- --cCCCGgcaGCaccccAGGAGCCCCGGCAGc -3'
miRNA:   3'- aauGGGCau-UGc----UCCUCGGGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 24326 0.74 0.319296
Target:  5'- --cCCCGgcaGCaccccAGGAGCCCCGGCAGc -3'
miRNA:   3'- aauGGGCau-UGc----UCCUCGGGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 24286 0.74 0.319296
Target:  5'- --cCCCGgcaGCaccccAGGAGCCCCGGCAGc -3'
miRNA:   3'- aauGGGCau-UGc----UCCUCGGGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 24366 0.74 0.319296
Target:  5'- --cCCCGgcaGCaccccAGGAGCCCCGGCAGc -3'
miRNA:   3'- aauGGGCau-UGc----UCCUCGGGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 107485 0.77 0.218683
Target:  5'- -gGCCCGcUGACuGGGAuGCCCUGGCAGc -3'
miRNA:   3'- aaUGGGC-AUUGcUCCU-CGGGGCCGUC- -5'
13375 5' -58.6 NC_003409.1 + 24248 1.05 0.002466
Target:  5'- uUUACCCGUAACGAGGAGCCCCGGCAGc -3'
miRNA:   3'- -AAUGGGCAUUGCUCCUCGGGGCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.