miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13376 5' -55 NC_003409.1 + 40432 0.65 0.91191
Target:  5'- uGCCACUcUACGCGGCuag-GCaC-CCGGa -3'
miRNA:   3'- -CGGUGA-AUGCGCCGuauaCG-GcGGUU- -5'
13376 5' -55 NC_003409.1 + 87925 0.65 0.91191
Target:  5'- uGCgGCUUGgGCGGCGccGUGCCcgguagGCCu- -3'
miRNA:   3'- -CGgUGAAUgCGCCGUa-UACGG------CGGuu -5'
13376 5' -55 NC_003409.1 + 107836 0.65 0.91191
Target:  5'- uGCCACagagUACGCGcGCAUc-GCCuCCAAc -3'
miRNA:   3'- -CGGUGa---AUGCGC-CGUAuaCGGcGGUU- -5'
13376 5' -55 NC_003409.1 + 28706 0.66 0.90565
Target:  5'- uGCCGCUU-C-UGGUuuucauugGUGCCGCCGAu -3'
miRNA:   3'- -CGGUGAAuGcGCCGua------UACGGCGGUU- -5'
13376 5' -55 NC_003409.1 + 86584 0.66 0.90565
Target:  5'- aGUgGCUaACG-GGCGUAcGCCGCCc- -3'
miRNA:   3'- -CGgUGAaUGCgCCGUAUaCGGCGGuu -5'
13376 5' -55 NC_003409.1 + 16622 0.66 0.90565
Target:  5'- aCCAaaaaUUACGCuGGCcccgcgcgGCCGCCAGg -3'
miRNA:   3'- cGGUg---AAUGCG-CCGuaua----CGGCGGUU- -5'
13376 5' -55 NC_003409.1 + 72864 0.66 0.90565
Target:  5'- aGCCGCaUGCaGCGGgGUGaGCCuGCCu- -3'
miRNA:   3'- -CGGUGaAUG-CGCCgUAUaCGG-CGGuu -5'
13376 5' -55 NC_003409.1 + 27847 0.66 0.90565
Target:  5'- cGCCACagcgACGcCGGCGcagGCCGCa-- -3'
miRNA:   3'- -CGGUGaa--UGC-GCCGUauaCGGCGguu -5'
13376 5' -55 NC_003409.1 + 45486 0.67 0.862995
Target:  5'- uCCACcguCG-GGCGUAUGUCGCCu- -3'
miRNA:   3'- cGGUGaauGCgCCGUAUACGGCGGuu -5'
13376 5' -55 NC_003409.1 + 115668 0.67 0.860643
Target:  5'- cGCCGCagaAUGUGGCccgggcuaguuccgGUAUGCCGCUc- -3'
miRNA:   3'- -CGGUGaa-UGCGCCG--------------UAUACGGCGGuu -5'
13376 5' -55 NC_003409.1 + 86033 0.67 0.855079
Target:  5'- -aUACUUGCGUcGCAc-UGCCGCCAc -3'
miRNA:   3'- cgGUGAAUGCGcCGUauACGGCGGUu -5'
13376 5' -55 NC_003409.1 + 17859 0.67 0.854276
Target:  5'- gGCUGCUaACGCGGCAUAcacuaGCCGguggugcCCGAg -3'
miRNA:   3'- -CGGUGAaUGCGCCGUAUa----CGGC-------GGUU- -5'
13376 5' -55 NC_003409.1 + 93939 0.67 0.84695
Target:  5'- gGCUGCUUugGaCGGCuauuaagGaCCGCCAAu -3'
miRNA:   3'- -CGGUGAAugC-GCCGuaua---C-GGCGGUU- -5'
13376 5' -55 NC_003409.1 + 87534 0.68 0.830077
Target:  5'- gGCCGCUUugGgGGagcaaucccUGUGgCGCCAGa -3'
miRNA:   3'- -CGGUGAAugCgCCgu-------AUACgGCGGUU- -5'
13376 5' -55 NC_003409.1 + 19292 0.68 0.82135
Target:  5'- cGCCACgugggGCG-GGCAUAcGCUGCUg- -3'
miRNA:   3'- -CGGUGaa---UGCgCCGUAUaCGGCGGuu -5'
13376 5' -55 NC_003409.1 + 131533 0.68 0.803358
Target:  5'- uGCCACgca-GCGGUAgucccugGCCGCCc- -3'
miRNA:   3'- -CGGUGaaugCGCCGUaua----CGGCGGuu -5'
13376 5' -55 NC_003409.1 + 58154 0.68 0.784707
Target:  5'- aGCCGCUgaUACGCGGCGUAuaUGggGUCAc -3'
miRNA:   3'- -CGGUGA--AUGCGCCGUAU--ACggCGGUu -5'
13376 5' -55 NC_003409.1 + 119790 0.68 0.784707
Target:  5'- gGCCGCgugccagGCGcCGGCGUGggcGCCGCg-- -3'
miRNA:   3'- -CGGUGaa-----UGC-GCCGUAUa--CGGCGguu -5'
13376 5' -55 NC_003409.1 + 18915 0.69 0.765474
Target:  5'- gGCCACUUACuGUGGCGguuauguugGUGCCcaGUCGGg -3'
miRNA:   3'- -CGGUGAAUG-CGCCGUa--------UACGG--CGGUU- -5'
13376 5' -55 NC_003409.1 + 93368 0.69 0.746736
Target:  5'- aGCUGCggaggauguuguggGCGUGGCGacUGCCGCCGc -3'
miRNA:   3'- -CGGUGaa------------UGCGCCGUauACGGCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.