Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13377 | 3' | -49.1 | NC_003409.1 | + | 47267 | 0.66 | 0.997237 |
Target: 5'- aGGCugUCCGGGCGAaccuccUCCAGGACAg -3' miRNA: 3'- gUCG--AGGCCUGUUcaac--AGGUUUUGU- -5' |
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13377 | 3' | -49.1 | NC_003409.1 | + | 42589 | 0.66 | 0.997188 |
Target: 5'- uCAGCUCUgccugcaGGuGCGAGUUGguggCCAGAcaGCAg -3' miRNA: 3'- -GUCGAGG-------CC-UGUUCAACa---GGUUU--UGU- -5' |
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13377 | 3' | -49.1 | NC_003409.1 | + | 111568 | 0.66 | 0.996124 |
Target: 5'- gAGCUgUGGGCAgAGgaaUGUCCGGuGCAg -3' miRNA: 3'- gUCGAgGCCUGU-UCa--ACAGGUUuUGU- -5' |
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13377 | 3' | -49.1 | NC_003409.1 | + | 107050 | 0.66 | 0.996124 |
Target: 5'- aAGggCCGGAuccuuuuuuucCAGGgcGUCCAGGGCAu -3' miRNA: 3'- gUCgaGGCCU-----------GUUCaaCAGGUUUUGU- -5' |
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13377 | 3' | -49.1 | NC_003409.1 | + | 68194 | 0.66 | 0.996124 |
Target: 5'- gCAGUUCaaCGGACAcggcGgaGUCCGAGGCGu -3' miRNA: 3'- -GUCGAG--GCCUGUu---CaaCAGGUUUUGU- -5' |
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13377 | 3' | -49.1 | NC_003409.1 | + | 7088 | 0.66 | 0.996719 |
Target: 5'- -cGCUCCGGuugcuuguuGCAuGUugUGUCCAAAuGCAg -3' miRNA: 3'- guCGAGGCC---------UGUuCA--ACAGGUUU-UGU- -5' |
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13377 | 3' | -49.1 | NC_003409.1 | + | 81322 | 0.67 | 0.993788 |
Target: 5'- cCAGCUCCGGAuCAAGcUuuaucguccUGUUUAGAAUg -3' miRNA: 3'- -GUCGAGGCCU-GUUC-A---------ACAGGUUUUGu -5' |
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13377 | 3' | -49.1 | NC_003409.1 | + | 54843 | 0.67 | 0.991682 |
Target: 5'- aAGgUCCaGGGCAAGUUGUacgcCCuuGACGu -3' miRNA: 3'- gUCgAGG-CCUGUUCAACA----GGuuUUGU- -5' |
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13377 | 3' | -49.1 | NC_003409.1 | + | 10023 | 0.68 | 0.987506 |
Target: 5'- -uGCUgCCGGcgGCGGGggGUCCAcGGACAa -3' miRNA: 3'- guCGA-GGCC--UGUUCaaCAGGU-UUUGU- -5' |
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13377 | 3' | -49.1 | NC_003409.1 | + | 61129 | 0.69 | 0.979624 |
Target: 5'- --uCUCUGGACAGGgcGUCCGu-GCAg -3' miRNA: 3'- gucGAGGCCUGUUCaaCAGGUuuUGU- -5' |
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13377 | 3' | -49.1 | NC_003409.1 | + | 5555 | 0.7 | 0.953708 |
Target: 5'- -uGCUCCGGugGAGUUGgaaAAGAUg -3' miRNA: 3'- guCGAGGCCugUUCAACaggUUUUGu -5' |
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13377 | 3' | -49.1 | NC_003409.1 | + | 98175 | 0.7 | 0.953708 |
Target: 5'- aAGCUaCUGGACAGGgcucgUG-CCAGGGCGc -3' miRNA: 3'- gUCGA-GGCCUGUUCa----ACaGGUUUUGU- -5' |
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13377 | 3' | -49.1 | NC_003409.1 | + | 10209 | 0.7 | 0.957788 |
Target: 5'- gCAGCUgCGuguaaGACAGGUUGUCCGuGGACc -3' miRNA: 3'- -GUCGAgGC-----CUGUUCAACAGGU-UUUGu -5' |
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13377 | 3' | -49.1 | NC_003409.1 | + | 58373 | 0.7 | 0.957788 |
Target: 5'- uCAGaCUCCGuGGuCGAGUUGUgCAAAAUAc -3' miRNA: 3'- -GUC-GAGGC-CU-GUUCAACAgGUUUUGU- -5' |
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13377 | 3' | -49.1 | NC_003409.1 | + | 26923 | 0.72 | 0.923691 |
Target: 5'- -uGUUuuGGACAAcUUGUCCGGAGCu -3' miRNA: 3'- guCGAggCCUGUUcAACAGGUUUUGu -5' |
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13377 | 3' | -49.1 | NC_003409.1 | + | 26761 | 1.09 | 0.011389 |
Target: 5'- gCAGCUCCGGACAAGUUGUCCAAAACAc -3' miRNA: 3'- -GUCGAGGCCUGUUCAACAGGUUUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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