miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13378 5' -46.7 NC_003409.1 + 123759 0.66 0.999898
Target:  5'- uGGCGcCAUGGgugcUGGUGUGUGUggGggGCa -3'
miRNA:   3'- cCCGC-GUAUC----ACUAUGCACAa-CuuUG- -5'
13378 5' -46.7 NC_003409.1 + 77124 0.66 0.999898
Target:  5'- aGGUacGCGUAGauGUACGUGUUGGugauGCu -3'
miRNA:   3'- cCCG--CGUAUCacUAUGCACAACUu---UG- -5'
13378 5' -46.7 NC_003409.1 + 134657 0.66 0.999776
Target:  5'- cGGaCGCAcgcguUGGUGGagGCGUGUUGucGCc -3'
miRNA:   3'- cCC-GCGU-----AUCACUa-UGCACAACuuUG- -5'
13378 5' -46.7 NC_003409.1 + 46332 0.67 0.999713
Target:  5'- cGGcGUGCGUGGUGu--CGUGU-GAuGCu -3'
miRNA:   3'- -CC-CGCGUAUCACuauGCACAaCUuUG- -5'
13378 5' -46.7 NC_003409.1 + 109139 0.67 0.999713
Target:  5'- cGGGCGCGUGG-GGUcgaAUGUGg-GAAGu -3'
miRNA:   3'- -CCCGCGUAUCaCUA---UGCACaaCUUUg -5'
13378 5' -46.7 NC_003409.1 + 60570 0.67 0.999635
Target:  5'- uGGGuCGCAUAGUGAaugAUGUGa------ -3'
miRNA:   3'- -CCC-GCGUAUCACUa--UGCACaacuuug -5'
13378 5' -46.7 NC_003409.1 + 33264 0.67 0.999539
Target:  5'- aGGGUGgGUGGgGAUGgGUGUgaAAGCa -3'
miRNA:   3'- -CCCGCgUAUCaCUAUgCACAacUUUG- -5'
13378 5' -46.7 NC_003409.1 + 25814 0.67 0.99928
Target:  5'- uGGGUGCAcAGaGAUAUGUGacgUGAcGCc -3'
miRNA:   3'- -CCCGCGUaUCaCUAUGCACa--ACUuUG- -5'
13378 5' -46.7 NC_003409.1 + 122026 0.68 0.998033
Target:  5'- uGGUGUAUGGcGAUA-GUGUUGGGAg -3'
miRNA:   3'- cCCGCGUAUCaCUAUgCACAACUUUg -5'
13378 5' -46.7 NC_003409.1 + 51030 0.68 0.998033
Target:  5'- aGGGaCGCAUAucacggGAUgcuaGCGUGUcUGAAACg -3'
miRNA:   3'- -CCC-GCGUAUca----CUA----UGCACA-ACUUUG- -5'
13378 5' -46.7 NC_003409.1 + 104841 0.69 0.997636
Target:  5'- cGGGCGCGUuucgucuuGUGAUugGg--UGGAGu -3'
miRNA:   3'- -CCCGCGUAu-------CACUAugCacaACUUUg -5'
13378 5' -46.7 NC_003409.1 + 30914 0.69 0.996027
Target:  5'- -cGCGCAUGGUGuAUGCGUGg------ -3'
miRNA:   3'- ccCGCGUAUCAC-UAUGCACaacuuug -5'
13378 5' -46.7 NC_003409.1 + 32663 0.69 0.996027
Target:  5'- uGGGCGUGUcaAGUGAgaugcUGCuGUG-UGAGGCa -3'
miRNA:   3'- -CCCGCGUA--UCACU-----AUG-CACaACUUUG- -5'
13378 5' -46.7 NC_003409.1 + 68119 0.7 0.995324
Target:  5'- cGGGCGCA-AGUGAgauaaagGUUGAAAa -3'
miRNA:   3'- -CCCGCGUaUCACUaugca--CAACUUUg -5'
13378 5' -46.7 NC_003409.1 + 31975 1.15 0.009386
Target:  5'- aGGGCGCAUAGUGAUACGUGUUGAAACa -3'
miRNA:   3'- -CCCGCGUAUCACUAUGCACAACUUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.