miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1338 3' -54 NC_001335.1 + 6056 0.66 0.732826
Target:  5'- -cGUaCGCGGACUUCGcgcuGGCCG-GCUa -3'
miRNA:   3'- auCA-GCGCCUGGAGUu---UCGGCaUGAc -5'
1338 3' -54 NC_001335.1 + 356 0.66 0.721992
Target:  5'- ---cCGcCGGAUCUCAAGGCCGcGCc- -3'
miRNA:   3'- aucaGC-GCCUGGAGUUUCGGCaUGac -5'
1338 3' -54 NC_001335.1 + 24456 0.67 0.655447
Target:  5'- uUGGUgaaCGCGGACUUCGAcAGCCGguugccCUGc -3'
miRNA:   3'- -AUCA---GCGCCUGGAGUU-UCGGCau----GAC- -5'
1338 3' -54 NC_001335.1 + 42094 0.71 0.429129
Target:  5'- aGGUUGCGGAUCUCcaucAGCCGcUugUGu -3'
miRNA:   3'- aUCAGCGCCUGGAGuu--UCGGC-AugAC- -5'
1338 3' -54 NC_001335.1 + 16132 0.71 0.429129
Target:  5'- aAGUCGUuccuGGGCCUCAcacGAGCCGc-CUGg -3'
miRNA:   3'- aUCAGCG----CCUGGAGU---UUCGGCauGAC- -5'
1338 3' -54 NC_001335.1 + 35854 0.72 0.391066
Target:  5'- aAGUCGCGGGCCUU--GGCCGc---- -3'
miRNA:   3'- aUCAGCGCCUGGAGuuUCGGCaugac -5'
1338 3' -54 NC_001335.1 + 24274 0.78 0.160853
Target:  5'- -cGUCGCGGGCCUCAGAcGCCaucugGUACUu -3'
miRNA:   3'- auCAGCGCCUGGAGUUU-CGG-----CAUGAc -5'
1338 3' -54 NC_001335.1 + 6376 1.06 0.001839
Target:  5'- gUAGUCGCGGACCUCAAAGCCGUACUGc -3'
miRNA:   3'- -AUCAGCGCCUGGAGUUUCGGCAUGAC- -5'
1338 3' -54 NC_001335.1 + 38360 0.69 0.588064
Target:  5'- gAGUCGCGGGCUggccGGCCGaGCg- -3'
miRNA:   3'- aUCAGCGCCUGGaguuUCGGCaUGac -5'
1338 3' -54 NC_001335.1 + 8010 0.67 0.655447
Target:  5'- --uUCGCGGggaACCUCcccGCCGUACUu -3'
miRNA:   3'- aucAGCGCC---UGGAGuuuCGGCAUGAc -5'
1338 3' -54 NC_001335.1 + 47935 0.67 0.707769
Target:  5'- aAGUCGUGGAcauCCUCAAcucaucgaacgaguGGCCGUuCg- -3'
miRNA:   3'- aUCAGCGCCU---GGAGUU--------------UCGGCAuGac -5'
1338 3' -54 NC_001335.1 + 11457 0.66 0.721992
Target:  5'- cGGUCuGCGcGACCUUggGGUCGUucACg- -3'
miRNA:   3'- aUCAG-CGC-CUGGAGuuUCGGCA--UGac -5'
1338 3' -54 NC_001335.1 + 15158 0.66 0.732826
Target:  5'- --uUCGCGGGCCUUcuGGCCcaGCUu -3'
miRNA:   3'- aucAGCGCCUGGAGuuUCGGcaUGAc -5'
1338 3' -54 NC_001335.1 + 10525 0.66 0.732826
Target:  5'- --cUCGCGGAacuUCUCAAGGUCGUGa-- -3'
miRNA:   3'- aucAGCGCCU---GGAGUUUCGGCAUgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.