Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13381 | 3' | -52.3 | NC_003409.1 | + | 37918 | 1.01 | 0.019652 |
Target: 5'- cGAGUUC-CGCGGACGAUCCAGACUAGg -3' miRNA: 3'- -CUCAAGuGCGCCUGCUAGGUCUGAUC- -5' |
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13381 | 3' | -52.3 | NC_003409.1 | + | 18053 | 0.69 | 0.918876 |
Target: 5'- gGGGUUCACGCGGGCauacgcagCCAaGCUAu -3' miRNA: 3'- -CUCAAGUGCGCCUGcua-----GGUcUGAUc -5' |
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13381 | 3' | -52.3 | NC_003409.1 | + | 56151 | 0.68 | 0.944896 |
Target: 5'- cAGUgCACGCaccAgGAUCCAGACUGGu -3' miRNA: 3'- cUCAaGUGCGcc-UgCUAGGUCUGAUC- -5' |
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13381 | 3' | -52.3 | NC_003409.1 | + | 9825 | 0.66 | 0.971046 |
Target: 5'- cGAGcacUCACGUcccuaacgGGACGGUCCAGuACUu- -3' miRNA: 3'- -CUCa--AGUGCG--------CCUGCUAGGUC-UGAuc -5' |
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13381 | 3' | -52.3 | NC_003409.1 | + | 69931 | 0.66 | 0.976503 |
Target: 5'- aGGGUUCACGCaugcGCGAgUCCcGACUAa -3' miRNA: 3'- -CUCAAGUGCGcc--UGCU-AGGuCUGAUc -5' |
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13381 | 3' | -52.3 | NC_003409.1 | + | 10703 | 0.66 | 0.981165 |
Target: 5'- cGGGUUUGCGC-GAgGAUCUGGACa-- -3' miRNA: 3'- -CUCAAGUGCGcCUgCUAGGUCUGauc -5' |
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13381 | 3' | -52.3 | NC_003409.1 | + | 104919 | 0.66 | 0.981165 |
Target: 5'- ---cUCugGCGGGCGGUCUuggugAGGCg-- -3' miRNA: 3'- cucaAGugCGCCUGCUAGG-----UCUGauc -5' |
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13381 | 3' | -52.3 | NC_003409.1 | + | 130411 | 0.66 | 0.971046 |
Target: 5'- cGGgcUACGUGGugGcgCCGGACa-- -3' miRNA: 3'- cUCaaGUGCGCCugCuaGGUCUGauc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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