miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13381 5' -63.2 NC_003409.1 + 33310 0.68 0.421032
Target:  5'- -cUGuuGCCAGGCGgagggcuguucuCGCCUGgaGCAGCg -3'
miRNA:   3'- uaGCucCGGUCCGC------------GCGGACg-CGUCG- -5'
13381 5' -63.2 NC_003409.1 + 72765 0.7 0.326147
Target:  5'- -gCGcGGCCGGGUacaacGUGCCaUGCGCAGa -3'
miRNA:   3'- uaGCuCCGGUCCG-----CGCGG-ACGCGUCg -5'
13381 5' -63.2 NC_003409.1 + 52697 0.7 0.305046
Target:  5'- uUCGAGGCCGcuauGGCuaGCCggagGCGCAa- -3'
miRNA:   3'- uAGCUCCGGU----CCGcgCGGa---CGCGUcg -5'
13381 5' -63.2 NC_003409.1 + 131506 0.73 0.185668
Target:  5'- cUCGGGGCCaacggugcccaguGGGUGUGCCa-CGCAGCg -3'
miRNA:   3'- uAGCUCCGG-------------UCCGCGCGGacGCGUCG- -5'
13381 5' -63.2 NC_003409.1 + 37953 1.08 0.000529
Target:  5'- aAUCGAGGCCAGGCGCGCCUGCGCAGCu -3'
miRNA:   3'- -UAGCUCCGGUCCGCGCGGACGCGUCG- -5'
13381 5' -63.2 NC_003409.1 + 109925 0.67 0.483516
Target:  5'- ----cGGCCAGGCGCaggaacGCuCUG-GCGGCg -3'
miRNA:   3'- uagcuCCGGUCCGCG------CG-GACgCGUCG- -5'
13381 5' -63.2 NC_003409.1 + 113409 0.68 0.395783
Target:  5'- uGUCuGA-GCCAGcGCGCaacacggcgaucGCCUGCGcCAGCg -3'
miRNA:   3'- -UAG-CUcCGGUC-CGCG------------CGGACGC-GUCG- -5'
13381 5' -63.2 NC_003409.1 + 59909 0.66 0.540407
Target:  5'- gGUCGGGGUgAGGUGCuucGCUgaguUGCGCAc- -3'
miRNA:   3'- -UAGCUCCGgUCCGCG---CGG----ACGCGUcg -5'
13381 5' -63.2 NC_003409.1 + 118308 0.67 0.483516
Target:  5'- --gGAGGCUgGGGUGCGCC-GCGCcgGGUu -3'
miRNA:   3'- uagCUCCGG-UCCGCGCGGaCGCG--UCG- -5'
13381 5' -63.2 NC_003409.1 + 99493 0.67 0.437518
Target:  5'- ----uGGCguGGCGCaGCacacgugCUGCGCAGCg -3'
miRNA:   3'- uagcuCCGguCCGCG-CG-------GACGCGUCG- -5'
13381 5' -63.2 NC_003409.1 + 117529 0.67 0.456162
Target:  5'- cUgGAGGCCAacuuccGuCGCGCUgguugaUGCGCGGCa -3'
miRNA:   3'- uAgCUCCGGUc-----C-GCGCGG------ACGCGUCG- -5'
13381 5' -63.2 NC_003409.1 + 110370 0.66 0.511634
Target:  5'- uAUUGAaGCCAGGCG-GCUUGaCGC-GCa -3'
miRNA:   3'- -UAGCUcCGGUCCGCgCGGAC-GCGuCG- -5'
13381 5' -63.2 NC_003409.1 + 41707 0.66 0.502183
Target:  5'- -aCGAuaccGGCCAcGGaCGCGCggacuCUGgGCAGCu -3'
miRNA:   3'- uaGCU----CCGGU-CC-GCGCG-----GACgCGUCG- -5'
13381 5' -63.2 NC_003409.1 + 49245 0.66 0.502183
Target:  5'- aGUCGAGccGCCAGGaacaCGCGaaUGCaGCAGUa -3'
miRNA:   3'- -UAGCUC--CGGUCC----GCGCggACG-CGUCG- -5'
13381 5' -63.2 NC_003409.1 + 20800 0.72 0.242323
Target:  5'- uUCcuGGCCGGGCGCgGCCUGgCGCAc- -3'
miRNA:   3'- uAGcuCCGGUCCGCG-CGGAC-GCGUcg -5'
13381 5' -63.2 NC_003409.1 + 40578 0.71 0.259929
Target:  5'- --aGAGGgCGcGGCGCGCCUGuCGacaGGCg -3'
miRNA:   3'- uagCUCCgGU-CCGCGCGGAC-GCg--UCG- -5'
13381 5' -63.2 NC_003409.1 + 112160 0.71 0.278565
Target:  5'- uUCGAGGCCAGGC---CCUGCaucCGGCa -3'
miRNA:   3'- uAGCUCCGGUCCGcgcGGACGc--GUCG- -5'
13381 5' -63.2 NC_003409.1 + 52067 0.7 0.304362
Target:  5'- cUCGAGcGCCAuguggugaguGGCGCGgucuccgucugacCCUGCGCGGa -3'
miRNA:   3'- uAGCUC-CGGU----------CCGCGC-------------GGACGCGUCg -5'
13381 5' -63.2 NC_003409.1 + 113589 0.66 0.492809
Target:  5'- cGUCGcuGGCgCAGGCGauCGCCguguugcGCGUGGCu -3'
miRNA:   3'- -UAGCu-CCG-GUCCGC--GCGGa------CGCGUCG- -5'
13381 5' -63.2 NC_003409.1 + 33988 0.68 0.421032
Target:  5'- --aGGGuaCGGGCGCGCCaGgGaCAGCg -3'
miRNA:   3'- uagCUCcgGUCCGCGCGGaCgC-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.