miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13382 3' -47.7 NC_003409.1 + 38011 0.66 0.999669
Target:  5'- uUCUCUGuaaggagugucUGGUAagaaucUUUAGGCAGGAucGCCa -3'
miRNA:   3'- -GGAGAU-----------ACCAU------AAGUCCGUCUUc-UGG- -5'
13382 3' -47.7 NC_003409.1 + 59895 0.66 0.999583
Target:  5'- uUCUCUAaaaacaGGg--UCGGGguGAGGugCu -3'
miRNA:   3'- -GGAGAUa-----CCauaAGUCCguCUUCugG- -5'
13382 3' -47.7 NC_003409.1 + 35330 0.66 0.999583
Target:  5'- gCCUCgguUGGacguacCAuGGCAGAAGGCg -3'
miRNA:   3'- -GGAGau-ACCauaa--GU-CCGUCUUCUGg -5'
13382 3' -47.7 NC_003409.1 + 70889 0.66 0.999583
Target:  5'- cCCUUUGUGGauguggaGUUCcGGCGGGAG-CUu -3'
miRNA:   3'- -GGAGAUACCa------UAAGuCCGUCUUCuGG- -5'
13382 3' -47.7 NC_003409.1 + 35166 0.66 0.999477
Target:  5'- -aUCUGUGGUGUccaaGGGgAGGguucugGGGCCg -3'
miRNA:   3'- ggAGAUACCAUAag--UCCgUCU------UCUGG- -5'
13382 3' -47.7 NC_003409.1 + 127822 0.67 0.999007
Target:  5'- uUUCUGauUGGUGcccCAGGCAGGAcuGCCa -3'
miRNA:   3'- gGAGAU--ACCAUaa-GUCCGUCUUc-UGG- -5'
13382 3' -47.7 NC_003409.1 + 80247 0.67 0.999007
Target:  5'- gCUCUAaGGgag-CuGGgGGAAGACCc -3'
miRNA:   3'- gGAGAUaCCauaaGuCCgUCUUCUGG- -5'
13382 3' -47.7 NC_003409.1 + 36272 0.67 0.998524
Target:  5'- -----cUGGUA---AGGCGGGAGACCc -3'
miRNA:   3'- ggagauACCAUaagUCCGUCUUCUGG- -5'
13382 3' -47.7 NC_003409.1 + 61023 0.67 0.998182
Target:  5'- cCCUCUGUGGUuguacguGUUCccGGGagcuguggaAGAGGGCa -3'
miRNA:   3'- -GGAGAUACCA-------UAAG--UCCg--------UCUUCUGg -5'
13382 3' -47.7 NC_003409.1 + 55220 0.68 0.996949
Target:  5'- ------gGGUcgUCAGGaAGAAGACCc -3'
miRNA:   3'- ggagauaCCAuaAGUCCgUCUUCUGG- -5'
13382 3' -47.7 NC_003409.1 + 15059 0.68 0.996389
Target:  5'- cCCUUgaacacauaUGUGGUcaUCucccgcggGGGCAGggGACUg -3'
miRNA:   3'- -GGAG---------AUACCAuaAG--------UCCGUCuuCUGG- -5'
13382 3' -47.7 NC_003409.1 + 73242 0.68 0.995747
Target:  5'- uCCUCggaaGGUAgaccggUUggaaaaccaaaAGGCAGAGGGCCc -3'
miRNA:   3'- -GGAGaua-CCAUa-----AG-----------UCCGUCUUCUGG- -5'
13382 3' -47.7 NC_003409.1 + 108767 0.69 0.994184
Target:  5'- -gUCUAUGGUGgcCAa-CAGGAGGCCg -3'
miRNA:   3'- ggAGAUACCAUaaGUccGUCUUCUGG- -5'
13382 3' -47.7 NC_003409.1 + 96763 0.69 0.993245
Target:  5'- --aCUAUGGgg-UCAGGguGGAcguGACCc -3'
miRNA:   3'- ggaGAUACCauaAGUCCguCUU---CUGG- -5'
13382 3' -47.7 NC_003409.1 + 6175 0.69 0.992188
Target:  5'- aCUCUggGGaAUUCgAGGCAGAAG-Cg -3'
miRNA:   3'- gGAGAuaCCaUAAG-UCCGUCUUCuGg -5'
13382 3' -47.7 NC_003409.1 + 7871 0.72 0.966783
Target:  5'- aCCUgU-UGGUAga-AGGCAGAAGAgCa -3'
miRNA:   3'- -GGAgAuACCAUaagUCCGUCUUCUgG- -5'
13382 3' -47.7 NC_003409.1 + 24012 0.72 0.966783
Target:  5'- gCCUCUggGUGGU-UUC-GGUAGAuggGGGCCg -3'
miRNA:   3'- -GGAGA--UACCAuAAGuCCGUCU---UCUGG- -5'
13382 3' -47.7 NC_003409.1 + 109279 0.72 0.964737
Target:  5'- -aUCUGcGGUGUUcCGGGCAGAccccguccaggcacgGGGCCc -3'
miRNA:   3'- ggAGAUaCCAUAA-GUCCGUCU---------------UCUGG- -5'
13382 3' -47.7 NC_003409.1 + 33303 0.72 0.959623
Target:  5'- cCCUCUucuGUugcCAGGCGGAGGGCUg -3'
miRNA:   3'- -GGAGAuacCAuaaGUCCGUCUUCUGG- -5'
13382 3' -47.7 NC_003409.1 + 92913 0.73 0.951466
Target:  5'- gCCUCUgucAUGG-GUUCAGGcCAGGAGcuuCCu -3'
miRNA:   3'- -GGAGA---UACCaUAAGUCC-GUCUUCu--GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.