miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13383 5' -48.4 NC_003409.1 + 43566 0.66 0.998801
Target:  5'- -cGACGGACAGCG--UCAUgAGACGg -3'
miRNA:   3'- cuUUGCUUGUCGUaaGGUGgUCUGUg -5'
13383 5' -48.4 NC_003409.1 + 96038 0.66 0.998538
Target:  5'- --cACGAucgACAGCGUcUCGCUgacAGACACa -3'
miRNA:   3'- cuuUGCU---UGUCGUAaGGUGG---UCUGUG- -5'
13383 5' -48.4 NC_003409.1 + 40033 0.66 0.998538
Target:  5'- gGGGACGcGACGGCAUcCCGCU-GGCAg -3'
miRNA:   3'- -CUUUGC-UUGUCGUAaGGUGGuCUGUg -5'
13383 5' -48.4 NC_003409.1 + 72128 0.66 0.998538
Target:  5'- aAAACcuauGCAGCcagcgUCCACUAGugGCa -3'
miRNA:   3'- cUUUGcu--UGUCGua---AGGUGGUCugUG- -5'
13383 5' -48.4 NC_003409.1 + 16965 0.66 0.998229
Target:  5'- ----aGAAaauGUAUguugCCACCGGACGCa -3'
miRNA:   3'- cuuugCUUgu-CGUAa---GGUGGUCUGUG- -5'
13383 5' -48.4 NC_003409.1 + 17941 0.66 0.997867
Target:  5'- uGGAACGcGgGGCAagUUGCCGGACGCc -3'
miRNA:   3'- -CUUUGCuUgUCGUaaGGUGGUCUGUG- -5'
13383 5' -48.4 NC_003409.1 + 40689 0.66 0.997444
Target:  5'- ---cCGAACGGCcgcgUCCAacgagCAGACACc -3'
miRNA:   3'- cuuuGCUUGUCGua--AGGUg----GUCUGUG- -5'
13383 5' -48.4 NC_003409.1 + 55443 0.66 0.997444
Target:  5'- -uGGCGGGCGGCAagCCGCCGccCAUg -3'
miRNA:   3'- cuUUGCUUGUCGUaaGGUGGUcuGUG- -5'
13383 5' -48.4 NC_003409.1 + 101155 0.66 0.997444
Target:  5'- gGAGGCGGG-AGCc-UUCACCAGACAa -3'
miRNA:   3'- -CUUUGCUUgUCGuaAGGUGGUCUGUg -5'
13383 5' -48.4 NC_003409.1 + 14 0.67 0.996389
Target:  5'- -----aGGCGGgGUUCUGCCAGGCAUa -3'
miRNA:   3'- cuuugcUUGUCgUAAGGUGGUCUGUG- -5'
13383 5' -48.4 NC_003409.1 + 107675 0.67 0.995739
Target:  5'- aGggGCGAaccACGGCGUugguacUCCGCUgccaGGGCAUc -3'
miRNA:   3'- -CuuUGCU---UGUCGUA------AGGUGG----UCUGUG- -5'
13383 5' -48.4 NC_003409.1 + 115489 0.67 0.994998
Target:  5'- --cGCGAGCGGCAUaCCGgaacuagcCCGGGcCACa -3'
miRNA:   3'- cuuUGCUUGUCGUAaGGU--------GGUCU-GUG- -5'
13383 5' -48.4 NC_003409.1 + 104855 0.67 0.994155
Target:  5'- gGAAAUGAaggacGCGGUGgccaccagCCACCAGACGa -3'
miRNA:   3'- -CUUUGCU-----UGUCGUaa------GGUGGUCUGUg -5'
13383 5' -48.4 NC_003409.1 + 103291 0.68 0.993202
Target:  5'- cGAGACGAcACAGCuugUCUccaagguugGCCAGACu- -3'
miRNA:   3'- -CUUUGCU-UGUCGua-AGG---------UGGUCUGug -5'
13383 5' -48.4 NC_003409.1 + 14010 0.68 0.990923
Target:  5'- --uGCGAacGCAGCGUaCCAgUAGACAa -3'
miRNA:   3'- cuuUGCU--UGUCGUAaGGUgGUCUGUg -5'
13383 5' -48.4 NC_003409.1 + 52561 0.68 0.989577
Target:  5'- gGGGACGuGGCAGC--UCUuauCCAGGCACu -3'
miRNA:   3'- -CUUUGC-UUGUCGuaAGGu--GGUCUGUG- -5'
13383 5' -48.4 NC_003409.1 + 74572 0.69 0.988081
Target:  5'- aGAAGguGACGGUAUaUCCGCCGGAgACu -3'
miRNA:   3'- -CUUUgcUUGUCGUA-AGGUGGUCUgUG- -5'
13383 5' -48.4 NC_003409.1 + 15404 0.69 0.986424
Target:  5'- cGGGCGGACGGCGUcggUCugUAGACGa -3'
miRNA:   3'- cUUUGCUUGUCGUAa--GGugGUCUGUg -5'
13383 5' -48.4 NC_003409.1 + 23407 0.69 0.984595
Target:  5'- uAGGCGAccGCGcCAUUCCAUUGGACGCc -3'
miRNA:   3'- cUUUGCU--UGUcGUAAGGUGGUCUGUG- -5'
13383 5' -48.4 NC_003409.1 + 119602 0.69 0.984595
Target:  5'- uAGGCGAccGCGcCAUUCCAUUGGACGCc -3'
miRNA:   3'- cUUUGCU--UGUcGUAAGGUGGUCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.