Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13384 | 3' | -56.3 | NC_003409.1 | + | 123756 | 0.69 | 0.702258 |
|
Target: 5'- cGCCAUGGGugcuGGUGugUguggGGGGCAGu -3' miRNA: 3'- aCGGUACCU----CCGCugGaa--CCUCGUUg -5' |
|||||||
| 13384 | 3' | -56.3 | NC_003409.1 | + | 110269 | 0.69 | 0.690972 |
|
Target: 5'- gGCCAgGGAGGCGAauggCUcgcgaucUGG-GCAACa -3' miRNA: 3'- aCGGUaCCUCCGCUg---GA-------ACCuCGUUG- -5' |
|||||||
| 13384 | 3' | -56.3 | NC_003409.1 | + | 33313 | 0.69 | 0.660955 |
|
Target: 5'- uUGCCAggcGGAGG-GcuguucucGCC-UGGAGCAGCg -3' miRNA: 3'- -ACGGUa--CCUCCgC--------UGGaACCUCGUUG- -5' |
|||||||
| 13384 | 3' | -56.3 | NC_003409.1 | + | 35345 | 0.71 | 0.577727 |
|
Target: 5'- -aCCAUGGcagaAGGCGGuuUUGGAGCGGa -3' miRNA: 3'- acGGUACC----UCCGCUggAACCUCGUUg -5' |
|||||||
| 13384 | 3' | -56.3 | NC_003409.1 | + | 20740 | 0.75 | 0.369978 |
|
Target: 5'- -uCCAgUGGAGGC-ACUUUGGGGCGGCg -3' miRNA: 3'- acGGU-ACCUCCGcUGGAACCUCGUUG- -5' |
|||||||
| 13384 | 3' | -56.3 | NC_003409.1 | + | 42730 | 1.1 | 0.001683 |
|
Target: 5'- cUGCCAUGGAGGCGACCUUGGAGCAACg -3' miRNA: 3'- -ACGGUACCUCCGCUGGAACCUCGUUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home