Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13387 | 3' | -48.7 | NC_003409.1 | + | 7029 | 0.66 | 0.996957 |
Target: 5'- aGaCAGUuuUCUG-CU-AGUGCACACUCc -3' miRNA: 3'- aC-GUCAu-AGAUaGGuUCACGUGUGAG- -5' |
|||||||
13387 | 3' | -48.7 | NC_003409.1 | + | 94753 | 0.67 | 0.992097 |
Target: 5'- gGCAGUGUUgcUCaccuuGGUGCACAUa- -3' miRNA: 3'- aCGUCAUAGauAGgu---UCACGUGUGag -5' |
|||||||
13387 | 3' | -48.7 | NC_003409.1 | + | 13121 | 0.69 | 0.972297 |
Target: 5'- -cCAGUAUC-AUCCAAGcGCACaACUUg -3' miRNA: 3'- acGUCAUAGaUAGGUUCaCGUG-UGAG- -5' |
|||||||
13387 | 3' | -48.7 | NC_003409.1 | + | 59749 | 0.74 | 0.851969 |
Target: 5'- aGUAGcg-CUAUCCAGGauUGCAUGCUCa -3' miRNA: 3'- aCGUCauaGAUAGGUUC--ACGUGUGAG- -5' |
|||||||
13387 | 3' | -48.7 | NC_003409.1 | + | 98785 | 0.76 | 0.736297 |
Target: 5'- gGCAGaUAUUUG-CCAGGUGCACAC-Cg -3' miRNA: 3'- aCGUC-AUAGAUaGGUUCACGUGUGaG- -5' |
|||||||
13387 | 3' | -48.7 | NC_003409.1 | + | 47072 | 1.12 | 0.006981 |
Target: 5'- aUGCAGUAUCUAUCCAAGUGCACACUCg -3' miRNA: 3'- -ACGUCAUAGAUAGGUUCACGUGUGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home