Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13388 | 3' | -45.2 | NC_003409.1 | + | 10328 | 0.65 | 0.999981 |
|
Target: 5'- aGGACGUGUGUuacgcgcGCCCCCUggugacguuuaaguUUUUgaaCAGUu -3' miRNA: 3'- -UUUGCAUAUA-------CGGGGGA--------------AAAAa--GUCA- -5' |
|||||||
| 13388 | 3' | -45.2 | NC_003409.1 | + | 2631 | 0.66 | 0.999977 |
|
Target: 5'- --gUGUAUAUGCCUCCggugucaUUUUUguGUg -3' miRNA: 3'- uuuGCAUAUACGGGGGa------AAAAAguCA- -5' |
|||||||
| 13388 | 3' | -45.2 | NC_003409.1 | + | 123454 | 0.66 | 0.999957 |
|
Target: 5'- cGAGCGUAUGUgGCCUaccuguagagCCUggagUUUCAGg -3' miRNA: 3'- -UUUGCAUAUA-CGGG----------GGAaa--AAAGUCa -5' |
|||||||
| 13388 | 3' | -45.2 | NC_003409.1 | + | 133054 | 0.71 | 0.99561 |
|
Target: 5'- cAACGUGUAuUGCUCCCUggugUUUgCGGUg -3' miRNA: 3'- uUUGCAUAU-ACGGGGGAa---AAAaGUCA- -5' |
|||||||
| 13388 | 3' | -45.2 | NC_003409.1 | + | 72090 | 0.76 | 0.93082 |
|
Target: 5'- gGGACGU--GUGCUCCCUccUUUCAGUg -3' miRNA: 3'- -UUUGCAuaUACGGGGGAaaAAAGUCA- -5' |
|||||||
| 13388 | 3' | -45.2 | NC_003409.1 | + | 47172 | 1.07 | 0.033966 |
|
Target: 5'- aAAACGUAUAUGCCCCCUUUUUUCAGUg -3' miRNA: 3'- -UUUGCAUAUACGGGGGAAAAAAGUCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home