miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13389 5' -47.3 NC_003409.1 + 40539 0.66 0.999826
Target:  5'- uCACGUCUugaccuCUCCGGcGGUggCGGCCa- -3'
miRNA:   3'- -GUGUAGAu-----GAGGUU-UUAuaGCCGGcc -5'
13389 5' -47.3 NC_003409.1 + 8593 0.66 0.999826
Target:  5'- gACAUCUGCgcCCuuGGUGUUGGUgGa -3'
miRNA:   3'- gUGUAGAUGa-GGuuUUAUAGCCGgCc -5'
13389 5' -47.3 NC_003409.1 + 92176 0.66 0.999826
Target:  5'- aGCGUCUGUUCCAAAGU-UCGGUUu- -3'
miRNA:   3'- gUGUAGAUGAGGUUUUAuAGCCGGcc -5'
13389 5' -47.3 NC_003409.1 + 115194 0.66 0.999797
Target:  5'- uGCAUCUGCacuuUCCAGAAgaggagGcgacauacgggcuauUCGGaCCGGg -3'
miRNA:   3'- gUGUAGAUG----AGGUUUUa-----U---------------AGCC-GGCC- -5'
13389 5' -47.3 NC_003409.1 + 23556 0.66 0.999713
Target:  5'- gCGCgGUCgccuaGCUCgaaCGGGAUugGUCGGCCGGa -3'
miRNA:   3'- -GUG-UAGa----UGAG---GUUUUA--UAGCCGGCC- -5'
13389 5' -47.3 NC_003409.1 + 119454 0.66 0.999713
Target:  5'- gCGCgGUCgccuaGCUCgaaCGGGAUugGUCGGCCGGa -3'
miRNA:   3'- -GUG-UAGa----UGAG---GUUUUA--UAGCCGGCC- -5'
13389 5' -47.3 NC_003409.1 + 9081 0.66 0.999713
Target:  5'- gCACGUCUGCUCCAG---GUUGaaCCGa -3'
miRNA:   3'- -GUGUAGAUGAGGUUuuaUAGCc-GGCc -5'
13389 5' -47.3 NC_003409.1 + 131842 0.66 0.999637
Target:  5'- -cCAUCUGCaaUCGAGAUGgcccUGGCCGGc -3'
miRNA:   3'- guGUAGAUGa-GGUUUUAUa---GCCGGCC- -5'
13389 5' -47.3 NC_003409.1 + 19063 0.67 0.999542
Target:  5'- ---cUCUACUgCAcacucugguGAUGUCGGCCGa -3'
miRNA:   3'- guguAGAUGAgGUu--------UUAUAGCCGGCc -5'
13389 5' -47.3 NC_003409.1 + 78713 0.67 0.99892
Target:  5'- -uCGUCUcUUCCAGGGUugacgaaGGCCGGg -3'
miRNA:   3'- guGUAGAuGAGGUUUUAuag----CCGGCC- -5'
13389 5' -47.3 NC_003409.1 + 28115 0.68 0.998071
Target:  5'- aCACGUCUucggCCAAugccGUGUUGGCgGGu -3'
miRNA:   3'- -GUGUAGAuga-GGUUu---UAUAGCCGgCC- -5'
13389 5' -47.3 NC_003409.1 + 121959 0.69 0.995443
Target:  5'- uGCGgugCUGC-CCAGGA---CGGCCGGa -3'
miRNA:   3'- gUGUa--GAUGaGGUUUUauaGCCGGCC- -5'
13389 5' -47.3 NC_003409.1 + 40268 0.7 0.991682
Target:  5'- aCGCAgaUACUaCCGGAGUGcCGGCUGGc -3'
miRNA:   3'- -GUGUagAUGA-GGUUUUAUaGCCGGCC- -5'
13389 5' -47.3 NC_003409.1 + 127170 0.72 0.968533
Target:  5'- gCAUGUCgccgACUCCAucga--CGGCCGGg -3'
miRNA:   3'- -GUGUAGa---UGAGGUuuuauaGCCGGCC- -5'
13389 5' -47.3 NC_003409.1 + 47350 1.13 0.011389
Target:  5'- cCACAUCUACUCCAAAAUAUCGGCCGGg -3'
miRNA:   3'- -GUGUAGAUGAGGUUUUAUAGCCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.