miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1339 3' -56.6 NC_001335.1 + 21292 0.66 0.628435
Target:  5'- uGGCUCcggGAGCUGGcUGAUGA-GGAc -3'
miRNA:   3'- -UCGAGcuaCUCGACCcGCUACUgCCU- -5'
1339 3' -56.6 NC_001335.1 + 5853 0.66 0.595508
Target:  5'- uGGCcagCGGgccGAGCUGGGgGAgagaaccgcUGACGGc -3'
miRNA:   3'- -UCGa--GCUa--CUCGACCCgCU---------ACUGCCu -5'
1339 3' -56.6 NC_001335.1 + 16072 0.66 0.584583
Target:  5'- gGGCUCGGaGAuCUaGGCGAUGACGc- -3'
miRNA:   3'- -UCGAGCUaCUcGAcCCGCUACUGCcu -5'
1339 3' -56.6 NC_001335.1 + 23843 0.68 0.509647
Target:  5'- gGGCUCGucgGAGCUGgaGGCGca-GCGGGa -3'
miRNA:   3'- -UCGAGCua-CUCGAC--CCGCuacUGCCU- -5'
1339 3' -56.6 NC_001335.1 + 32902 0.74 0.221473
Target:  5'- cGGCUCGGgcUGGGCagGGGCGGUGcuccACGGu -3'
miRNA:   3'- -UCGAGCU--ACUCGa-CCCGCUAC----UGCCu -5'
1339 3' -56.6 NC_001335.1 + 6513 1.09 0.000673
Target:  5'- aAGCUCGAUGAGCUGGGCGAUGACGGAg -3'
miRNA:   3'- -UCGAGCUACUCGACCCGCUACUGCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.