Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1339 | 5' | -52.5 | NC_001335.1 | + | 26537 | 0.66 | 0.844529 |
|
Target: 5'- -gCCGAUGggUCGCauca-GCUCcUCg -3' miRNA: 3'- gaGGCUACuuAGCGgaucgCGAGuAG- -5' |
|||||||
| 1339 | 5' | -52.5 | NC_001335.1 | + | 47026 | 0.66 | 0.844529 |
|
Target: 5'- uUCCGGUugcccUUGCCggGGCGCUuCAUCu -3' miRNA: 3'- gAGGCUAcuu--AGCGGa-UCGCGA-GUAG- -5' |
|||||||
| 1339 | 5' | -52.5 | NC_001335.1 | + | 8701 | 0.66 | 0.835491 |
|
Target: 5'- -gCCGAggcgGAAacccUCgacgGCCUGGCGCUCGg- -3' miRNA: 3'- gaGGCUa---CUU----AG----CGGAUCGCGAGUag -5' |
|||||||
| 1339 | 5' | -52.5 | NC_001335.1 | + | 7403 | 0.66 | 0.825288 |
|
Target: 5'- cCUUCGAUGAccucugcAUCGCgUGGCcUUCAUUg -3' miRNA: 3'- -GAGGCUACU-------UAGCGgAUCGcGAGUAG- -5' |
|||||||
| 1339 | 5' | -52.5 | NC_001335.1 | + | 18169 | 0.67 | 0.787111 |
|
Target: 5'- uUCgCGA--AGUCGaCCgguGCGCUCAUCa -3' miRNA: 3'- gAG-GCUacUUAGC-GGau-CGCGAGUAG- -5' |
|||||||
| 1339 | 5' | -52.5 | NC_001335.1 | + | 41468 | 0.67 | 0.773772 |
|
Target: 5'- -aCCGG-GAAgucggcguucguccUCGCCUAcGCGCUCAagUCg -3' miRNA: 3'- gaGGCUaCUU--------------AGCGGAU-CGCGAGU--AG- -5' |
|||||||
| 1339 | 5' | -52.5 | NC_001335.1 | + | 17039 | 0.67 | 0.76648 |
|
Target: 5'- gCUCCGGUGAGcaucgUGCCgagcGUGCUCGc- -3' miRNA: 3'- -GAGGCUACUUa----GCGGau--CGCGAGUag -5' |
|||||||
| 1339 | 5' | -52.5 | NC_001335.1 | + | 364 | 0.68 | 0.734464 |
|
Target: 5'- gUCUuuaGAUGAG-CGCCUgguGGCGCUCuuAUCg -3' miRNA: 3'- gAGG---CUACUUaGCGGA---UCGCGAG--UAG- -5' |
|||||||
| 1339 | 5' | -52.5 | NC_001335.1 | + | 17971 | 0.69 | 0.667823 |
|
Target: 5'- uUCuCGAccuUGAGUCGCUU-GCGCUCcUCu -3' miRNA: 3'- gAG-GCU---ACUUAGCGGAuCGCGAGuAG- -5' |
|||||||
| 1339 | 5' | -52.5 | NC_001335.1 | + | 6479 | 1.11 | 0.001211 |
|
Target: 5'- cCUCCGAUGAAUCGCCUAGCGCUCAUCa -3' miRNA: 3'- -GAGGCUACUUAGCGGAUCGCGAGUAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home