Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13390 | 3' | -57.3 | NC_003409.1 | + | 35808 | 0.66 | 0.830566 |
|
Target: 5'- cGUCAauGGGGGAcGUGGgcUGGGCGGaUCu -3' miRNA: 3'- -CAGUggCCUCCU-UACC--ACCUGCCgAG- -5' |
|||||||
| 13390 | 3' | -57.3 | NC_003409.1 | + | 30963 | 0.67 | 0.795714 |
|
Target: 5'- --uGCUGGAGGcg-GG-GGugGGUUCa -3' miRNA: 3'- cagUGGCCUCCuuaCCaCCugCCGAG- -5' |
|||||||
| 13390 | 3' | -57.3 | NC_003409.1 | + | 42067 | 0.67 | 0.767994 |
|
Target: 5'- cGUCAagguuaaCGGAcGGGAucUGGUGGGCuuucagcuGGCUCu -3' miRNA: 3'- -CAGUg------GCCU-CCUU--ACCACCUG--------CCGAG- -5' |
|||||||
| 13390 | 3' | -57.3 | NC_003409.1 | + | 132689 | 0.68 | 0.719497 |
|
Target: 5'- ----aCGGGGGggUGGacGACGGCUg -3' miRNA: 3'- cagugGCCUCCuuACCacCUGCCGAg -5' |
|||||||
| 13390 | 3' | -57.3 | NC_003409.1 | + | 31655 | 0.69 | 0.689426 |
|
Target: 5'- aUgGCUGGucuGggUGGUGuGACGGCUUg -3' miRNA: 3'- cAgUGGCCuc-CuuACCAC-CUGCCGAG- -5' |
|||||||
| 13390 | 3' | -57.3 | NC_003409.1 | + | 31871 | 0.7 | 0.617992 |
|
Target: 5'- --uGCUGGAGGAu--GUGGGCGcGCUCc -3' miRNA: 3'- cagUGGCCUCCUuacCACCUGC-CGAG- -5' |
|||||||
| 13390 | 3' | -57.3 | NC_003409.1 | + | 66654 | 0.72 | 0.497947 |
|
Target: 5'- -cCGCUGGgugGGGGAUGGUGGGaGGCUg -3' miRNA: 3'- caGUGGCC---UCCUUACCACCUgCCGAg -5' |
|||||||
| 13390 | 3' | -57.3 | NC_003409.1 | + | 105207 | 0.84 | 0.096025 |
|
Target: 5'- gGUCGCCGGGGGAGUGGgcGG-UGGCUCu -3' miRNA: 3'- -CAGUGGCCUCCUUACCa-CCuGCCGAG- -5' |
|||||||
| 13390 | 3' | -57.3 | NC_003409.1 | + | 48965 | 1.08 | 0.002105 |
|
Target: 5'- aGUCACCGGAGGAAUGGUGGACGGCUCc -3' miRNA: 3'- -CAGUGGCCUCCUUACCACCUGCCGAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home