miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13390 5' -56.4 NC_003409.1 + 52424 0.66 0.885493
Target:  5'- cGCcccuUGGCCGCCAcGCCUgCUG-GAu -3'
miRNA:   3'- -CGcuu-ACCGGUGGUuCGGAgGGCaCU- -5'
13390 5' -56.4 NC_003409.1 + 96316 0.66 0.881293
Target:  5'- uCGGAUGGaagccggugguaggaCCACCAGGCUUCUCcucuGUGGc -3'
miRNA:   3'- cGCUUACC---------------GGUGGUUCGGAGGG----CACU- -5'
13390 5' -56.4 NC_003409.1 + 53293 0.66 0.878449
Target:  5'- -aGAGUGGCCGCCcuGCUUaCCagGUGc -3'
miRNA:   3'- cgCUUACCGGUGGuuCGGA-GGg-CACu -5'
13390 5' -56.4 NC_003409.1 + 128895 0.66 0.878449
Target:  5'- cCG-AUGGCCcuUCAGGCCUCCU-UGAg -3'
miRNA:   3'- cGCuUACCGGu-GGUUCGGAGGGcACU- -5'
13390 5' -56.4 NC_003409.1 + 87742 0.66 0.871183
Target:  5'- cGCGcccugaGGCCACCA----UCCCGUGAc -3'
miRNA:   3'- -CGCuua---CCGGUGGUucggAGGGCACU- -5'
13390 5' -56.4 NC_003409.1 + 57578 0.66 0.85601
Target:  5'- aGUGGAgagGGCCACUaguagucaGAGUCUgaacCCCGUGu -3'
miRNA:   3'- -CGCUUa--CCGGUGG--------UUCGGA----GGGCACu -5'
13390 5' -56.4 NC_003409.1 + 78563 0.67 0.84002
Target:  5'- cGCGAAaaugCACuCGAGCCUCCCG-GAa -3'
miRNA:   3'- -CGCUUaccgGUG-GUUCGGAGGGCaCU- -5'
13390 5' -56.4 NC_003409.1 + 79239 0.67 0.84002
Target:  5'- cCGGcgGGCUGCCAGGaga-CCGUGAa -3'
miRNA:   3'- cGCUuaCCGGUGGUUCggagGGCACU- -5'
13390 5' -56.4 NC_003409.1 + 21959 0.68 0.794129
Target:  5'- aCGAA-GGCCAacaccccaaaaaauCCAcGCC-CCCGUGAc -3'
miRNA:   3'- cGCUUaCCGGU--------------GGUuCGGaGGGCACU- -5'
13390 5' -56.4 NC_003409.1 + 19094 0.68 0.76908
Target:  5'- gGCGAccaagAUGGCC-CCGcggauGGCgCUCCUGUGc -3'
miRNA:   3'- -CGCU-----UACCGGuGGU-----UCG-GAGGGCACu -5'
13390 5' -56.4 NC_003409.1 + 55178 0.68 0.749938
Target:  5'- -----aGGCCAUCuacAGCCUCCCGaagGAg -3'
miRNA:   3'- cgcuuaCCGGUGGu--UCGGAGGGCa--CU- -5'
13390 5' -56.4 NC_003409.1 + 55449 0.69 0.700418
Target:  5'- aGCGAAUGGCgggCGgCAAGCCgccgcccaugUCCCG-GAa -3'
miRNA:   3'- -CGCUUACCG---GUgGUUCGG----------AGGGCaCU- -5'
13390 5' -56.4 NC_003409.1 + 110073 0.7 0.669937
Target:  5'- uGCGccUGGCCgACCAGGCgCUCgCCGgUGGc -3'
miRNA:   3'- -CGCuuACCGG-UGGUUCG-GAG-GGC-ACU- -5'
13390 5' -56.4 NC_003409.1 + 103443 0.7 0.639177
Target:  5'- uGCGAuuguugucAUGGCUACgguGGCCUCCCugGUGGc -3'
miRNA:   3'- -CGCU--------UACCGGUGgu-UCGGAGGG--CACU- -5'
13390 5' -56.4 NC_003409.1 + 32282 0.73 0.517629
Target:  5'- gGCGGacaccucccacGUGGCCA--GAGCC-CCCGUGAa -3'
miRNA:   3'- -CGCU-----------UACCGGUggUUCGGaGGGCACU- -5'
13390 5' -56.4 NC_003409.1 + 90079 0.73 0.517629
Target:  5'- gGCGAAUGcGCCucguGgUAGGCCUCUCGUGu -3'
miRNA:   3'- -CGCUUAC-CGG----UgGUUCGGAGGGCACu -5'
13390 5' -56.4 NC_003409.1 + 36697 0.73 0.469538
Target:  5'- -aGAAUGGCgACCAcgucGCCUUCUGUGGc -3'
miRNA:   3'- cgCUUACCGgUGGUu---CGGAGGGCACU- -5'
13390 5' -56.4 NC_003409.1 + 108859 0.77 0.311267
Target:  5'- cGCuuAAUGGCCGCCAuGGCCUCCUGUc- -3'
miRNA:   3'- -CGc-UUACCGGUGGU-UCGGAGGGCAcu -5'
13390 5' -56.4 NC_003409.1 + 49000 1.1 0.001898
Target:  5'- uGCGAAUGGCCACCAAGCCUCCCGUGAu -3'
miRNA:   3'- -CGCUUACCGGUGGUUCGGAGGGCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.