Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13390 | 5' | -56.4 | NC_003409.1 | + | 96316 | 0.66 | 0.881293 |
Target: 5'- uCGGAUGGaagccggugguaggaCCACCAGGCUUCUCcucuGUGGc -3' miRNA: 3'- cGCUUACC---------------GGUGGUUCGGAGGG----CACU- -5' |
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13390 | 5' | -56.4 | NC_003409.1 | + | 128895 | 0.66 | 0.878449 |
Target: 5'- cCG-AUGGCCcuUCAGGCCUCCU-UGAg -3' miRNA: 3'- cGCuUACCGGu-GGUUCGGAGGGcACU- -5' |
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13390 | 5' | -56.4 | NC_003409.1 | + | 53293 | 0.66 | 0.878449 |
Target: 5'- -aGAGUGGCCGCCcuGCUUaCCagGUGc -3' miRNA: 3'- cgCUUACCGGUGGuuCGGA-GGg-CACu -5' |
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13390 | 5' | -56.4 | NC_003409.1 | + | 87742 | 0.66 | 0.871183 |
Target: 5'- cGCGcccugaGGCCACCA----UCCCGUGAc -3' miRNA: 3'- -CGCuua---CCGGUGGUucggAGGGCACU- -5' |
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13390 | 5' | -56.4 | NC_003409.1 | + | 57578 | 0.66 | 0.85601 |
Target: 5'- aGUGGAgagGGCCACUaguagucaGAGUCUgaacCCCGUGu -3' miRNA: 3'- -CGCUUa--CCGGUGG--------UUCGGA----GGGCACu -5' |
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13390 | 5' | -56.4 | NC_003409.1 | + | 52424 | 0.66 | 0.885493 |
Target: 5'- cGCcccuUGGCCGCCAcGCCUgCUG-GAu -3' miRNA: 3'- -CGcuu-ACCGGUGGUuCGGAgGGCaCU- -5' |
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13390 | 5' | -56.4 | NC_003409.1 | + | 78563 | 0.67 | 0.84002 |
Target: 5'- cGCGAAaaugCACuCGAGCCUCCCG-GAa -3' miRNA: 3'- -CGCUUaccgGUG-GUUCGGAGGGCaCU- -5' |
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13390 | 5' | -56.4 | NC_003409.1 | + | 79239 | 0.67 | 0.84002 |
Target: 5'- cCGGcgGGCUGCCAGGaga-CCGUGAa -3' miRNA: 3'- cGCUuaCCGGUGGUUCggagGGCACU- -5' |
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13390 | 5' | -56.4 | NC_003409.1 | + | 19094 | 0.68 | 0.76908 |
Target: 5'- gGCGAccaagAUGGCC-CCGcggauGGCgCUCCUGUGc -3' miRNA: 3'- -CGCU-----UACCGGuGGU-----UCG-GAGGGCACu -5' |
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13390 | 5' | -56.4 | NC_003409.1 | + | 55178 | 0.68 | 0.749938 |
Target: 5'- -----aGGCCAUCuacAGCCUCCCGaagGAg -3' miRNA: 3'- cgcuuaCCGGUGGu--UCGGAGGGCa--CU- -5' |
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13390 | 5' | -56.4 | NC_003409.1 | + | 21959 | 0.68 | 0.794129 |
Target: 5'- aCGAA-GGCCAacaccccaaaaaauCCAcGCC-CCCGUGAc -3' miRNA: 3'- cGCUUaCCGGU--------------GGUuCGGaGGGCACU- -5' |
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13390 | 5' | -56.4 | NC_003409.1 | + | 55449 | 0.69 | 0.700418 |
Target: 5'- aGCGAAUGGCgggCGgCAAGCCgccgcccaugUCCCG-GAa -3' miRNA: 3'- -CGCUUACCG---GUgGUUCGG----------AGGGCaCU- -5' |
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13390 | 5' | -56.4 | NC_003409.1 | + | 110073 | 0.7 | 0.669937 |
Target: 5'- uGCGccUGGCCgACCAGGCgCUCgCCGgUGGc -3' miRNA: 3'- -CGCuuACCGG-UGGUUCG-GAG-GGC-ACU- -5' |
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13390 | 5' | -56.4 | NC_003409.1 | + | 103443 | 0.7 | 0.639177 |
Target: 5'- uGCGAuuguugucAUGGCUACgguGGCCUCCCugGUGGc -3' miRNA: 3'- -CGCU--------UACCGGUGgu-UCGGAGGG--CACU- -5' |
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13390 | 5' | -56.4 | NC_003409.1 | + | 90079 | 0.73 | 0.517629 |
Target: 5'- gGCGAAUGcGCCucguGgUAGGCCUCUCGUGu -3' miRNA: 3'- -CGCUUAC-CGG----UgGUUCGGAGGGCACu -5' |
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13390 | 5' | -56.4 | NC_003409.1 | + | 32282 | 0.73 | 0.517629 |
Target: 5'- gGCGGacaccucccacGUGGCCA--GAGCC-CCCGUGAa -3' miRNA: 3'- -CGCU-----------UACCGGUggUUCGGaGGGCACU- -5' |
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13390 | 5' | -56.4 | NC_003409.1 | + | 36697 | 0.73 | 0.469538 |
Target: 5'- -aGAAUGGCgACCAcgucGCCUUCUGUGGc -3' miRNA: 3'- cgCUUACCGgUGGUu---CGGAGGGCACU- -5' |
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13390 | 5' | -56.4 | NC_003409.1 | + | 108859 | 0.77 | 0.311267 |
Target: 5'- cGCuuAAUGGCCGCCAuGGCCUCCUGUc- -3' miRNA: 3'- -CGc-UUACCGGUGGU-UCGGAGGGCAcu -5' |
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13390 | 5' | -56.4 | NC_003409.1 | + | 49000 | 1.1 | 0.001898 |
Target: 5'- uGCGAAUGGCCACCAAGCCUCCCGUGAu -3' miRNA: 3'- -CGCUUACCGGUGGUUCGGAGGGCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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