miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13395 3' -54 NC_003409.1 + 36579 0.66 0.93207
Target:  5'- gUCGuuGCGGCGGGuCAgggcGAGGGGAAg -3'
miRNA:   3'- -AGUggCGUCGUCU-GUga--CUCCCUUUa -5'
13395 3' -54 NC_003409.1 + 109346 0.66 0.926671
Target:  5'- aCGCCGCccCGGACGCguacccaAGGGAGGUg -3'
miRNA:   3'- aGUGGCGucGUCUGUGac-----UCCCUUUA- -5'
13395 3' -54 NC_003409.1 + 21988 0.66 0.926671
Target:  5'- aUCGCCGUuucGCauuuacacgaGGACACacGAGGGGAGUu -3'
miRNA:   3'- -AGUGGCGu--CG----------UCUGUGa-CUCCCUUUA- -5'
13395 3' -54 NC_003409.1 + 75478 0.66 0.921014
Target:  5'- -aGCUGCAGCAGGUAUaGAcGGGAAAc -3'
miRNA:   3'- agUGGCGUCGUCUGUGaCU-CCCUUUa -5'
13395 3' -54 NC_003409.1 + 53288 0.67 0.888916
Target:  5'- gUCGCCGCGGC--GCACcaccuGGGAGGUa -3'
miRNA:   3'- -AGUGGCGUCGucUGUGacu--CCCUUUA- -5'
13395 3' -54 NC_003409.1 + 94338 0.67 0.881752
Target:  5'- --uCCGCAGCccGACaaccgGCUGGGGGggGc -3'
miRNA:   3'- aguGGCGUCGu-CUG-----UGACUCCCuuUa -5'
13395 3' -54 NC_003409.1 + 107751 0.68 0.858853
Target:  5'- aUCAgCGU-GCAGGCACUGAGGc---- -3'
miRNA:   3'- -AGUgGCGuCGUCUGUGACUCCcuuua -5'
13395 3' -54 NC_003409.1 + 111617 0.68 0.833973
Target:  5'- aUCAUC-CAcGCGGAUagGCUGGGGGGAAg -3'
miRNA:   3'- -AGUGGcGU-CGUCUG--UGACUCCCUUUa -5'
13395 3' -54 NC_003409.1 + 42681 0.68 0.833973
Target:  5'- uUCGCCuGCAgagcgauacGCAGACuacucCUGGGGGAAc- -3'
miRNA:   3'- -AGUGG-CGU---------CGUCUGu----GACUCCCUUua -5'
13395 3' -54 NC_003409.1 + 88376 0.69 0.825275
Target:  5'- -aGCCGUGGUuuGCAUUGGGGGGGAc -3'
miRNA:   3'- agUGGCGUCGucUGUGACUCCCUUUa -5'
13395 3' -54 NC_003409.1 + 101705 0.69 0.815488
Target:  5'- -gGCCGaugauucCAGguGGCACggGAGGGAGAg -3'
miRNA:   3'- agUGGC-------GUCguCUGUGa-CUCCCUUUa -5'
13395 3' -54 NC_003409.1 + 128605 0.7 0.759613
Target:  5'- -gGCC-CAGguGACAUUGGGGGGu-- -3'
miRNA:   3'- agUGGcGUCguCUGUGACUCCCUuua -5'
13395 3' -54 NC_003409.1 + 24362 0.7 0.73961
Target:  5'- cCGCCGCGcgcGCAGuGCGC-GAGGGggGg -3'
miRNA:   3'- aGUGGCGU---CGUC-UGUGaCUCCCuuUa -5'
13395 3' -54 NC_003409.1 + 61918 0.87 0.10078
Target:  5'- aUCACCGgAcCAGACACUGAGGGAAAUg -3'
miRNA:   3'- -AGUGGCgUcGUCUGUGACUCCCUUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.