miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13397 3' -55.9 NC_003409.1 + 115581 0.66 0.90715
Target:  5'- cGGUGGCcuccuccuugucUGUCCUgGGC-AGGACGUUu -3'
miRNA:   3'- -CUACCGc-----------ACAGGAgCCGcUUCUGCAG- -5'
13397 3' -55.9 NC_003409.1 + 63087 0.66 0.902132
Target:  5'- cGGUGGUGUG-CCU-GGUGGAGcACGa- -3'
miRNA:   3'- -CUACCGCACaGGAgCCGCUUC-UGCag -5'
13397 3' -55.9 NC_003409.1 + 111747 0.66 0.895647
Target:  5'- --cGGCG--UCCcUGGCGGAGACGg- -3'
miRNA:   3'- cuaCCGCacAGGaGCCGCUUCUGCag -5'
13397 3' -55.9 NC_003409.1 + 34135 0.66 0.891644
Target:  5'- -cUGG-GUGUCCgugagaugccuggcgUCGGCGAaaaagucagcGGugGUCg -3'
miRNA:   3'- cuACCgCACAGG---------------AGCCGCU----------UCugCAG- -5'
13397 3' -55.9 NC_003409.1 + 128530 0.66 0.888929
Target:  5'- -cUGcCGUGUCCaguaGGgGGAGAUGUCa -3'
miRNA:   3'- cuACcGCACAGGag--CCgCUUCUGCAG- -5'
13397 3' -55.9 NC_003409.1 + 109706 0.66 0.881983
Target:  5'- aGUGGCGcaUGUCCgcCGGC--AGugGUCc -3'
miRNA:   3'- cUACCGC--ACAGGa-GCCGcuUCugCAG- -5'
13397 3' -55.9 NC_003409.1 + 57862 0.67 0.866669
Target:  5'- -uUGGCGUGUCgcuggauUUCGcGCGA--ACGUCa -3'
miRNA:   3'- cuACCGCACAG-------GAGC-CGCUucUGCAG- -5'
13397 3' -55.9 NC_003409.1 + 43308 0.67 0.835777
Target:  5'- --gGGCGUcucuUUCUCGGCGAAGAgaagcucgaUGUCu -3'
miRNA:   3'- cuaCCGCAc---AGGAGCCGCUUCU---------GCAG- -5'
13397 3' -55.9 NC_003409.1 + 15119 0.69 0.754436
Target:  5'- --aGGgGUG-CCUCGGCGGAG-UGUa -3'
miRNA:   3'- cuaCCgCACaGGAGCCGCUUCuGCAg -5'
13397 3' -55.9 NC_003409.1 + 81012 0.69 0.734925
Target:  5'- --cGGacgaGUGgcg-CGGCGAAGACGUCg -3'
miRNA:   3'- cuaCCg---CACaggaGCCGCUUCUGCAG- -5'
13397 3' -55.9 NC_003409.1 + 52581 0.7 0.694893
Target:  5'- --aGGCGUGgcggCCaaggGGCGggGACGUg -3'
miRNA:   3'- cuaCCGCACa---GGag--CCGCuuCUGCAg -5'
13397 3' -55.9 NC_003409.1 + 34433 0.71 0.654009
Target:  5'- cGGUGGC-UGgCCUgCGGgGggGAUGUCa -3'
miRNA:   3'- -CUACCGcACaGGA-GCCgCuuCUGCAG- -5'
13397 3' -55.9 NC_003409.1 + 58968 0.71 0.654009
Target:  5'- -cUGGUauuggGUCCUCGGgGcGGGCGUCg -3'
miRNA:   3'- cuACCGca---CAGGAGCCgCuUCUGCAG- -5'
13397 3' -55.9 NC_003409.1 + 68293 1.1 0.002181
Target:  5'- cGAUGGCGUGUCCUCGGCGAAGACGUCg -3'
miRNA:   3'- -CUACCGCACAGGAGCCGCUUCUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.