miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13398 5' -56.2 NC_003409.1 + 55199 0.66 0.890064
Target:  5'- -uUCCaaGUUCCGGGGucacACAGGCCaUCUa -3'
miRNA:   3'- acAGGcgCGAGGCCUU----UGUCUGG-AGA- -5'
13398 5' -56.2 NC_003409.1 + 115116 0.66 0.867936
Target:  5'- -cUCCggGUGCUCCGGGAGCAGggaggcuGCCa-- -3'
miRNA:   3'- acAGG--CGCGAGGCCUUUGUC-------UGGaga -5'
13398 5' -56.2 NC_003409.1 + 76191 0.67 0.84537
Target:  5'- gGUCC-CGUUUagGGAGACGG-CCUCUa -3'
miRNA:   3'- aCAGGcGCGAGg-CCUUUGUCuGGAGA- -5'
13398 5' -56.2 NC_003409.1 + 132800 0.67 0.84049
Target:  5'- gUGUCCGCGuCUCgGGGcaccccgaggauguuGACugGGGCCUUUu -3'
miRNA:   3'- -ACAGGCGC-GAGgCCU---------------UUG--UCUGGAGA- -5'
13398 5' -56.2 NC_003409.1 + 112413 0.67 0.837199
Target:  5'- aGUCCGCGCacgUCaCGGugcuuuaauaGGGCAG-CCUCg -3'
miRNA:   3'- aCAGGCGCG---AG-GCC----------UUUGUCuGGAGa -5'
13398 5' -56.2 NC_003409.1 + 52867 0.67 0.837199
Target:  5'- aGUuuGCGcCUCCGGcuagccauAGCGG-CCUCg -3'
miRNA:   3'- aCAggCGC-GAGGCCu-------UUGUCuGGAGa -5'
13398 5' -56.2 NC_003409.1 + 77257 0.69 0.716861
Target:  5'- aUGgCCGCGC-CCaGggGCAGACC-Ca -3'
miRNA:   3'- -ACaGGCGCGaGGcCuuUGUCUGGaGa -5'
13398 5' -56.2 NC_003409.1 + 30496 0.7 0.696739
Target:  5'- -uUUCGCGCUCgCGGAGGCuggcgAGGCCUg- -3'
miRNA:   3'- acAGGCGCGAG-GCCUUUG-----UCUGGAga -5'
13398 5' -56.2 NC_003409.1 + 43711 0.7 0.686592
Target:  5'- cUGUCCGuCGuCUCCGGAcGCcGGCCa-- -3'
miRNA:   3'- -ACAGGC-GC-GAGGCCUuUGuCUGGaga -5'
13398 5' -56.2 NC_003409.1 + 50601 0.76 0.345468
Target:  5'- gUGUCUGCagaGCaUUCGGGGACAGACCUUUa -3'
miRNA:   3'- -ACAGGCG---CG-AGGCCUUUGUCUGGAGA- -5'
13398 5' -56.2 NC_003409.1 + 71170 1.08 0.002753
Target:  5'- gUGUCCGCGCUCCGGAAACAGACCUCUg -3'
miRNA:   3'- -ACAGGCGCGAGGCCUUUGUCUGGAGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.