miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13399 3' -56.7 NC_003409.1 + 51655 0.66 0.850651
Target:  5'- gGCGggaugaCCCUggcGACCGGCUgaACCGGg- -3'
miRNA:   3'- gCGC------GGGAauuUUGGCCGG--UGGCCau -5'
13399 3' -56.7 NC_003409.1 + 26214 0.66 0.85065
Target:  5'- gGCGCUCcaucu-CCGGCCACaGGUu -3'
miRNA:   3'- gCGCGGGaauuuuGGCCGGUGgCCAu -5'
13399 3' -56.7 NC_003409.1 + 84077 0.66 0.842596
Target:  5'- aCGUGUCCUuuggUGAAGCUguGGCUggggaaACCGGUGg -3'
miRNA:   3'- -GCGCGGGA----AUUUUGG--CCGG------UGGCCAU- -5'
13399 3' -56.7 NC_003409.1 + 132934 0.66 0.834347
Target:  5'- cCGcCGCCUUcAcggcauccGGACCGGCCGCgGGa- -3'
miRNA:   3'- -GC-GCGGGAaU--------UUUGGCCGGUGgCCau -5'
13399 3' -56.7 NC_003409.1 + 108994 0.67 0.826764
Target:  5'- aCGCGCCCggccugcgucccAGCCGGCgGCCa--- -3'
miRNA:   3'- -GCGCGGGaauu--------UUGGCCGgUGGccau -5'
13399 3' -56.7 NC_003409.1 + 87741 0.67 0.825913
Target:  5'- aCGCGCCCUga-----GGCCACCa--- -3'
miRNA:   3'- -GCGCGGGAauuuuggCCGGUGGccau -5'
13399 3' -56.7 NC_003409.1 + 112167 0.67 0.825913
Target:  5'- cCGUGCCUUcGAGGCCaGGCCcugcauCCGGc- -3'
miRNA:   3'- -GCGCGGGAaUUUUGG-CCGGu-----GGCCau -5'
13399 3' -56.7 NC_003409.1 + 35946 0.67 0.817299
Target:  5'- aCGCGUCU-----GCCGGCCuaguuGCCGGa- -3'
miRNA:   3'- -GCGCGGGaauuuUGGCCGG-----UGGCCau -5'
13399 3' -56.7 NC_003409.1 + 107699 0.67 0.808515
Target:  5'- aGCGCU----GGACCcacGGCCGCCGGa- -3'
miRNA:   3'- gCGCGGgaauUUUGG---CCGGUGGCCau -5'
13399 3' -56.7 NC_003409.1 + 45381 0.67 0.808515
Target:  5'- aCGUGCCCUUucgucACCcaGGCCGCuCGcGUGa -3'
miRNA:   3'- -GCGCGGGAAuuu--UGG--CCGGUG-GC-CAU- -5'
13399 3' -56.7 NC_003409.1 + 130575 0.67 0.808515
Target:  5'- uGuCGCCCgucacuggaugUAAGuCCGGCCACCGuGg- -3'
miRNA:   3'- gC-GCGGGa----------AUUUuGGCCGGUGGC-Cau -5'
13399 3' -56.7 NC_003409.1 + 68263 0.67 0.790469
Target:  5'- uGCGCCCgagGccucuggccAGACgGGCCcauacgcccaaACCGGUAg -3'
miRNA:   3'- gCGCGGGaa-U---------UUUGgCCGG-----------UGGCCAU- -5'
13399 3' -56.7 NC_003409.1 + 46151 0.68 0.752715
Target:  5'- gGCGUgC---AAACCGGCuCACCGGg- -3'
miRNA:   3'- gCGCGgGaauUUUGGCCG-GUGGCCau -5'
13399 3' -56.7 NC_003409.1 + 107707 0.68 0.752715
Target:  5'- uGCGCaCCaUAGGGCU-GCCGCUGGUGc -3'
miRNA:   3'- gCGCG-GGaAUUUUGGcCGGUGGCCAU- -5'
13399 3' -56.7 NC_003409.1 + 92112 0.68 0.733155
Target:  5'- aCGCGuCCCUguuucUgGGCCGCCGGc- -3'
miRNA:   3'- -GCGC-GGGAauuuuGgCCGGUGGCCau -5'
13399 3' -56.7 NC_003409.1 + 9903 0.69 0.713239
Target:  5'- aCGUGUCggUAAAGuuGGCCACUGGc- -3'
miRNA:   3'- -GCGCGGgaAUUUUggCCGGUGGCCau -5'
13399 3' -56.7 NC_003409.1 + 90673 0.69 0.713239
Target:  5'- cCGCGCCCgucugcguGACCGGCaCAUCGc-- -3'
miRNA:   3'- -GCGCGGGaauu----UUGGCCG-GUGGCcau -5'
13399 3' -56.7 NC_003409.1 + 110073 0.69 0.682863
Target:  5'- uGCGCCUggccGACCaGGCgcuCGCCGGUGg -3'
miRNA:   3'- gCGCGGGaauuUUGG-CCG---GUGGCCAU- -5'
13399 3' -56.7 NC_003409.1 + 108787 0.7 0.662385
Target:  5'- uGgGCCU----GGCCGGCCACCGuGUc -3'
miRNA:   3'- gCgCGGGaauuUUGGCCGGUGGC-CAu -5'
13399 3' -56.7 NC_003409.1 + 79617 0.7 0.641808
Target:  5'- gGgGuUCCUUGGcGGCCGGCCACUGGa- -3'
miRNA:   3'- gCgC-GGGAAUU-UUGGCCGGUGGCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.