miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
134 3' -57.2 AC_000006.1 + 20590 0.66 0.471416
Target:  5'- aGAcGGCCuCGaUGACgCcgcggUGCGGCuGGUGCa -3'
miRNA:   3'- aCU-UCGG-GC-ACUG-G-----ACGUCGuCCACG- -5'
134 3' -57.2 AC_000006.1 + 32588 0.66 0.46108
Target:  5'- gGAAcCCaCGUGACCaucguaccagaUGCGGCAguauaucaGGUGCc -3'
miRNA:   3'- aCUUcGG-GCACUGG-----------ACGUCGU--------CCACG- -5'
134 3' -57.2 AC_000006.1 + 14708 0.66 0.45698
Target:  5'- aUGAGGUCCGgcagcgaccaguaGACUUGCuccgcgccGCAGGUGa -3'
miRNA:   3'- -ACUUCGGGCa------------CUGGACGu-------CGUCCACg -5'
134 3' -57.2 AC_000006.1 + 8274 0.66 0.440776
Target:  5'- cGggGCCac-GACCgUGCcGC-GGUGCg -3'
miRNA:   3'- aCuuCGGgcaCUGG-ACGuCGuCCACG- -5'
134 3' -57.2 AC_000006.1 + 12533 0.66 0.440776
Target:  5'- cGAGGCCauaGGCCagGC-GCAGGUGg -3'
miRNA:   3'- aCUUCGGgcaCUGGa-CGuCGUCCACg -5'
134 3' -57.2 AC_000006.1 + 24944 0.66 0.439775
Target:  5'- -cGAGUuguauCCGUGACCgccgggcUGCGGCGcggauGGUGCg -3'
miRNA:   3'- acUUCG-----GGCACUGG-------ACGUCGU-----CCACG- -5'
134 3' -57.2 AC_000006.1 + 20871 0.67 0.41516
Target:  5'- gGcGGUCCGaGaACCcaaaggggucgaacaUGUAGCAGGUGCg -3'
miRNA:   3'- aCuUCGGGCaC-UGG---------------ACGUCGUCCACG- -5'
134 3' -57.2 AC_000006.1 + 19508 0.67 0.4113
Target:  5'- aGGAGCCCGgGAgCaGgAGCAGGUu- -3'
miRNA:   3'- aCUUCGGGCaCUgGaCgUCGUCCAcg -5'
134 3' -57.2 AC_000006.1 + 3850 0.67 0.383077
Target:  5'- cGGAGCUCGgacACCUGCugGGuCAGG-GCg -3'
miRNA:   3'- aCUUCGGGCac-UGGACG--UC-GUCCaCG- -5'
134 3' -57.2 AC_000006.1 + 20258 0.67 0.383077
Target:  5'- gUGAAGCCCGaguuguUGugCUGgaagGGCAGGgugacgGCc -3'
miRNA:   3'- -ACUUCGGGC------ACugGACg---UCGUCCa-----CG- -5'
134 3' -57.2 AC_000006.1 + 3784 0.68 0.338986
Target:  5'- gGccGCCC-UGACC--CAGCAGGUGUc -3'
miRNA:   3'- aCuuCGGGcACUGGacGUCGUCCACG- -5'
134 3' -57.2 AC_000006.1 + 11776 0.68 0.322411
Target:  5'- gGAGGCgUcaGuACCccGCAGCGGGUGCa -3'
miRNA:   3'- aCUUCGgGcaC-UGGa-CGUCGUCCACG- -5'
134 3' -57.2 AC_000006.1 + 15552 0.72 0.194754
Target:  5'- -cGAGUCC-UG-CCUGCGGgGGGUGCa -3'
miRNA:   3'- acUUCGGGcACuGGACGUCgUCCACG- -5'
134 3' -57.2 AC_000006.1 + 4405 0.73 0.16016
Target:  5'- cGAugGGCCCGUGGgCUGCGGCuuugGCa -3'
miRNA:   3'- aCU--UCGGGCACUgGACGUCGuccaCG- -5'
134 3' -57.2 AC_000006.1 + 16081 1.11 0.00021
Target:  5'- cUGAAGCCCGUGACCUGCAGCAGGUGCu -3'
miRNA:   3'- -ACUUCGGGCACUGGACGUCGUCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.