miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
134 5' -60.8 AC_000006.1 + 8694 0.66 0.284531
Target:  5'- cGUGgaGC-GCgCGGGUCGCGGcGAUCu- -3'
miRNA:   3'- -CACgaCGaCG-GCUCGGCGCC-CUAGuu -5'
134 5' -60.8 AC_000006.1 + 13345 0.67 0.212895
Target:  5'- -cGCUGUcGCCGcGgCGCGGGcgCAGg -3'
miRNA:   3'- caCGACGaCGGCuCgGCGCCCuaGUU- -5'
134 5' -60.8 AC_000006.1 + 3682 0.69 0.166342
Target:  5'- cUGCgGCUGCCGcGGCUGCGGcGGUg-- -3'
miRNA:   3'- cACGaCGACGGC-UCGGCGCC-CUAguu -5'
134 5' -60.8 AC_000006.1 + 11224 0.7 0.136283
Target:  5'- -cGCUGCUaaacaucGCCGAGCC-CGaGGGUCGc -3'
miRNA:   3'- caCGACGA-------CGGCUCGGcGC-CCUAGUu -5'
134 5' -60.8 AC_000006.1 + 13179 0.74 0.068242
Target:  5'- -cGCUGCUGCagccGCCGCGGG-UCAAg -3'
miRNA:   3'- caCGACGACGgcu-CGGCGCCCuAGUU- -5'
134 5' -60.8 AC_000006.1 + 14201 0.93 0.00225
Target:  5'- gGUGCUGCUGCCGGGCUGCGGGGUgGAc -3'
miRNA:   3'- -CACGACGACGGCUCGGCGCCCUAgUU- -5'
134 5' -60.8 AC_000006.1 + 16118 1.05 0.000215
Target:  5'- gGUGCUGCUGCCGAGCCGCGGGAUCAAg -3'
miRNA:   3'- -CACGACGACGGCUCGGCGCCCUAGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.