miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1340 5' -58.4 NC_001335.1 + 49368 0.66 0.543152
Target:  5'- gGCCAGAGcGAUguGGacugcccgaacugugGUGCCUGCUa- -3'
miRNA:   3'- -UGGUCUC-CUGguCCg--------------CAUGGACGAgc -5'
1340 5' -58.4 NC_001335.1 + 16690 0.66 0.542096
Target:  5'- -gCAGGGGAgCCAGgaGCGUGCCgaacgaGUUCGc -3'
miRNA:   3'- ugGUCUCCU-GGUC--CGCAUGGa-----CGAGC- -5'
1340 5' -58.4 NC_001335.1 + 34541 0.66 0.490266
Target:  5'- cACgAGAGGGCUGGGCugcUGCgCUGgUCGa -3'
miRNA:   3'- -UGgUCUCCUGGUCCGc--AUG-GACgAGC- -5'
1340 5' -58.4 NC_001335.1 + 51384 0.66 0.490266
Target:  5'- uGCCAGAGGACUgaGGGUcgGCggaaGCUCGa -3'
miRNA:   3'- -UGGUCUCCUGG--UCCGcaUGga--CGAGC- -5'
1340 5' -58.4 NC_001335.1 + 37388 0.67 0.480172
Target:  5'- cCCGGAGGACguGGCcGUcaugaugauCCUGCUg- -3'
miRNA:   3'- uGGUCUCCUGguCCG-CAu--------GGACGAgc -5'
1340 5' -58.4 NC_001335.1 + 24729 0.67 0.47018
Target:  5'- aACCGGAGGcucguccacGCCAGGaUGUauGCCgcgauccgguagUGCUCGa -3'
miRNA:   3'- -UGGUCUCC---------UGGUCC-GCA--UGG------------ACGAGC- -5'
1340 5' -58.4 NC_001335.1 + 50844 0.67 0.460294
Target:  5'- aGCCAGGccgacaGGCCGGGCGUcACCgggcaGUUCGa -3'
miRNA:   3'- -UGGUCUc-----CUGGUCCGCA-UGGa----CGAGC- -5'
1340 5' -58.4 NC_001335.1 + 15096 0.69 0.351243
Target:  5'- gGCCGauGAGGACCGGaGCGUACUUcuuCUUGa -3'
miRNA:   3'- -UGGU--CUCCUGGUC-CGCAUGGAc--GAGC- -5'
1340 5' -58.4 NC_001335.1 + 13927 0.69 0.334941
Target:  5'- gACCGGAGGAUCGGGgcCGcuacUGCCUGgaCGc -3'
miRNA:   3'- -UGGUCUCCUGGUCC--GC----AUGGACgaGC- -5'
1340 5' -58.4 NC_001335.1 + 2364 0.71 0.2823
Target:  5'- uACCAGAGGACUGGGagcugaauUACCgGCUCc -3'
miRNA:   3'- -UGGUCUCCUGGUCCgc------AUGGaCGAGc -5'
1340 5' -58.4 NC_001335.1 + 47765 0.72 0.236433
Target:  5'- aGCCAGcaAGGAUCGcGGCGUugCUGCg-- -3'
miRNA:   3'- -UGGUC--UCCUGGU-CCGCAugGACGagc -5'
1340 5' -58.4 NC_001335.1 + 12110 0.72 0.229821
Target:  5'- cGCCAGcucgucuGGGGCCAGGuCGgcgGCCUGUccuUCGa -3'
miRNA:   3'- -UGGUC-------UCCUGGUCC-GCa--UGGACG---AGC- -5'
1340 5' -58.4 NC_001335.1 + 31108 0.73 0.202242
Target:  5'- cACCGagcgcGAGGucaaggacauccGCCAGGCGUACCUGggCGg -3'
miRNA:   3'- -UGGU-----CUCC------------UGGUCCGCAUGGACgaGC- -5'
1340 5' -58.4 NC_001335.1 + 40640 0.73 0.188808
Target:  5'- cGCCGGAucguguucuucaacgGGAUCAcGGacaaGUACCUGCUCGa -3'
miRNA:   3'- -UGGUCU---------------CCUGGU-CCg---CAUGGACGAGC- -5'
1340 5' -58.4 NC_001335.1 + 6945 1.08 0.000563
Target:  5'- cACCAGAGGACCAGGCGUACCUGCUCGu -3'
miRNA:   3'- -UGGUCUCCUGGUCCGCAUGGACGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.