miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13400 3' -54.1 NC_003409.1 + 91645 0.66 0.920189
Target:  5'- -uGGUccGGGGcAGCAUCACCCCagAUg- -3'
miRNA:   3'- uuCCA--UCCC-UUGUAGUGGGGggUAau -5'
13400 3' -54.1 NC_003409.1 + 106567 0.66 0.90797
Target:  5'- uGAGGccagucaAGGGAgaACAuagaugccaguUCACCCCCCAg-- -3'
miRNA:   3'- -UUCCa------UCCCU--UGU-----------AGUGGGGGGUaau -5'
13400 3' -54.1 NC_003409.1 + 30105 0.67 0.887731
Target:  5'- -cGGUGGGGcaAAUguGUCACCaagcgCCCCAUUGu -3'
miRNA:   3'- uuCCAUCCC--UUG--UAGUGG-----GGGGUAAU- -5'
13400 3' -54.1 NC_003409.1 + 92283 0.67 0.865291
Target:  5'- uGGGacuuGGGAGCAaauaacgauGCCCCCCGUUAa -3'
miRNA:   3'- uUCCau--CCCUUGUag-------UGGGGGGUAAU- -5'
13400 3' -54.1 NC_003409.1 + 75452 0.67 0.865291
Target:  5'- uAGGGgcggcuGGGAcgGCGUCACCCCUUGUc- -3'
miRNA:   3'- -UUCCau----CCCU--UGUAGUGGGGGGUAau -5'
13400 3' -54.1 NC_003409.1 + 67277 0.68 0.857346
Target:  5'- uGAGGaUGGGGAcuggGCGUCACCgCggUCCAUUAg -3'
miRNA:   3'- -UUCC-AUCCCU----UGUAGUGG-G--GGGUAAU- -5'
13400 3' -54.1 NC_003409.1 + 114403 0.69 0.795986
Target:  5'- cGGGGUGGGGcuGGCAagGCCCCCa---- -3'
miRNA:   3'- -UUCCAUCCC--UUGUagUGGGGGguaau -5'
13400 3' -54.1 NC_003409.1 + 26535 0.71 0.685071
Target:  5'- aGAGGUGGGGAacgaggGCAUaCACCCCUg---- -3'
miRNA:   3'- -UUCCAUCCCU------UGUA-GUGGGGGguaau -5'
13400 3' -54.1 NC_003409.1 + 71933 0.71 0.685071
Target:  5'- aAAGG-AGGGAGCA-CACgUCCCGUUGu -3'
miRNA:   3'- -UUCCaUCCCUUGUaGUGgGGGGUAAU- -5'
13400 3' -54.1 NC_003409.1 + 114703 0.71 0.685071
Target:  5'- cGGGGaGGGGAACA-CACgCCCCAa-- -3'
miRNA:   3'- -UUCCaUCCCUUGUaGUGgGGGGUaau -5'
13400 3' -54.1 NC_003409.1 + 31494 0.79 0.268976
Target:  5'- -cGGUGGGGAACAUCugGCCCCCaCAc-- -3'
miRNA:   3'- uuCCAUCCCUUGUAG--UGGGGG-GUaau -5'
13400 3' -54.1 NC_003409.1 + 75245 1.04 0.006228
Target:  5'- uAAGGUAGGGAACAUCACCCCCCAUUAu -3'
miRNA:   3'- -UUCCAUCCCUUGUAGUGGGGGGUAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.