miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13400 5' -58.1 NC_003409.1 + 23363 0.66 0.82273
Target:  5'- gGCgUGACcuGGaGGUGACcCCGUgcaCCCGGg -3'
miRNA:   3'- -UG-ACUGuuCC-CCACUGcGGCA---GGGUC- -5'
13400 5' -58.1 NC_003409.1 + 119647 0.66 0.822729
Target:  5'- gGCgUGACcuGGaGGUGACcCCGUgcaCCCGGg -3'
miRNA:   3'- -UG-ACUGuuCC-CCACUGcGGCA---GGGUC- -5'
13400 5' -58.1 NC_003409.1 + 87922 0.66 0.805468
Target:  5'- uGCUG-CGGcuuGGGcGGCGCCGUgCCCGGu -3'
miRNA:   3'- -UGACuGUUc--CCCaCUGCGGCA-GGGUC- -5'
13400 5' -58.1 NC_003409.1 + 115602 0.67 0.730929
Target:  5'- uCUGGCAGcauGGGGUGGgGCCGguggCCUc- -3'
miRNA:   3'- uGACUGUU---CCCCACUgCGGCa---GGGuc -5'
13400 5' -58.1 NC_003409.1 + 24348 0.67 0.721138
Target:  5'- -gUGcGCGAGGGGgGGCuGCUGUCCCu- -3'
miRNA:   3'- ugAC-UGUUCCCCaCUG-CGGCAGGGuc -5'
13400 5' -58.1 NC_003409.1 + 51300 0.68 0.691352
Target:  5'- -aUGGCcgagauGGugucGGUGACGCCGUCCCc- -3'
miRNA:   3'- ugACUGuu----CC----CCACUGCGGCAGGGuc -5'
13400 5' -58.1 NC_003409.1 + 78500 0.68 0.691352
Target:  5'- cGCUGACAuucguggaaccaAGGGGcUGGgGUCGUCUgGGu -3'
miRNA:   3'- -UGACUGU------------UCCCC-ACUgCGGCAGGgUC- -5'
13400 5' -58.1 NC_003409.1 + 61884 0.69 0.661127
Target:  5'- aGCgggGACGGGGGGUGA-GCCuaaCCCAc -3'
miRNA:   3'- -UGa--CUGUUCCCCACUgCGGca-GGGUc -5'
13400 5' -58.1 NC_003409.1 + 113504 0.69 0.610399
Target:  5'- cUUGGCGcccacguauGGGuuguGGUGACGCUGUCCCGu -3'
miRNA:   3'- uGACUGU---------UCC----CCACUGCGGCAGGGUc -5'
13400 5' -58.1 NC_003409.1 + 18143 0.71 0.530395
Target:  5'- aACUGGCcAGGGGccagUGAgCGCC-UCCCGGu -3'
miRNA:   3'- -UGACUGuUCCCC----ACU-GCGGcAGGGUC- -5'
13400 5' -58.1 NC_003409.1 + 132584 0.71 0.520631
Target:  5'- uGCUGGcCGAGaGGGUGGCGCCcagaGUgCCCGa -3'
miRNA:   3'- -UGACU-GUUC-CCCACUGCGG----CA-GGGUc -5'
13400 5' -58.1 NC_003409.1 + 107402 0.71 0.510939
Target:  5'- cCUGuuGCAGGaGGGUGGCGacaCGUUCCGGa -3'
miRNA:   3'- uGAC--UGUUC-CCCACUGCg--GCAGGGUC- -5'
13400 5' -58.1 NC_003409.1 + 123785 0.73 0.410197
Target:  5'- cCUGcCAGGGGGUGACuaGCU-UCCCAGg -3'
miRNA:   3'- uGACuGUUCCCCACUG--CGGcAGGGUC- -5'
13400 5' -58.1 NC_003409.1 + 91471 0.81 0.141412
Target:  5'- cGCUGGCAAgaacaucuGGGGUGAUGCUGcCCCGGa -3'
miRNA:   3'- -UGACUGUU--------CCCCACUGCGGCaGGGUC- -5'
13400 5' -58.1 NC_003409.1 + 75280 1.07 0.002232
Target:  5'- aACUGACAAGGGGUGACGCCGUCCCAGc -3'
miRNA:   3'- -UGACUGUUCCCCACUGCGGCAGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.