miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13401 3' -51.2 NC_003409.1 + 87983 0.66 0.988115
Target:  5'- gGCCGGUCaGCGuuGAugGAGCaGGCGGAu-- -3'
miRNA:   3'- gUGGCCAG-CGU--CU--UUUG-CCGUCUuua -5'
13401 3' -51.2 NC_003409.1 + 108538 0.66 0.988115
Target:  5'- gGCCG--CGguGGAAuccugGCGGCAGAAAa -3'
miRNA:   3'- gUGGCcaGCguCUUU-----UGCCGUCUUUa -5'
13401 3' -51.2 NC_003409.1 + 82544 0.66 0.988115
Target:  5'- cCGCCGucCGCAGGucaauugccAGCGGCAGGAu- -3'
miRNA:   3'- -GUGGCcaGCGUCUu--------UUGCCGUCUUua -5'
13401 3' -51.2 NC_003409.1 + 73229 0.66 0.986496
Target:  5'- gACCGGUU--GGAAAACcaaaaGGCAGAGGg -3'
miRNA:   3'- gUGGCCAGcgUCUUUUG-----CCGUCUUUa -5'
13401 3' -51.2 NC_003409.1 + 30125 0.66 0.986496
Target:  5'- aGCUGGUUccggGCAGgcGACGGUGGGGc- -3'
miRNA:   3'- gUGGCCAG----CGUCuuUUGCCGUCUUua -5'
13401 3' -51.2 NC_003409.1 + 90832 0.66 0.982756
Target:  5'- uGCCGGUcaCGCAGAcGGGC-GCGGAAu- -3'
miRNA:   3'- gUGGCCA--GCGUCU-UUUGcCGUCUUua -5'
13401 3' -51.2 NC_003409.1 + 35367 0.66 0.980616
Target:  5'- gAgCGGacUCGguGggGcGCGGCGGAGAa -3'
miRNA:   3'- gUgGCC--AGCguCuuU-UGCCGUCUUUa -5'
13401 3' -51.2 NC_003409.1 + 124531 0.66 0.978283
Target:  5'- aGCaGGa-GCAGGAGACGGUGGAAGa -3'
miRNA:   3'- gUGgCCagCGUCUUUUGCCGUCUUUa -5'
13401 3' -51.2 NC_003409.1 + 76608 0.67 0.97575
Target:  5'- gUAgUGGUgGCAGAAAAUGGCAc---- -3'
miRNA:   3'- -GUgGCCAgCGUCUUUUGCCGUcuuua -5'
13401 3' -51.2 NC_003409.1 + 121682 0.67 0.97575
Target:  5'- gCGCCGGgaacaCGCAGguGGCaGCGGAu-- -3'
miRNA:   3'- -GUGGCCa----GCGUCuuUUGcCGUCUuua -5'
13401 3' -51.2 NC_003409.1 + 126865 0.67 0.972142
Target:  5'- uGCCGGUggagguaaagguguUGCGG-GAGCGGguGAAGg -3'
miRNA:   3'- gUGGCCA--------------GCGUCuUUUGCCguCUUUa -5'
13401 3' -51.2 NC_003409.1 + 105215 0.67 0.970046
Target:  5'- gCGCCuggGGUCGCcggGGGAGugGGCGGu--- -3'
miRNA:   3'- -GUGG---CCAGCG---UCUUUugCCGUCuuua -5'
13401 3' -51.2 NC_003409.1 + 103614 0.67 0.970046
Target:  5'- aACCcGUagUGCAGGGAcaACGGCAGggGg -3'
miRNA:   3'- gUGGcCA--GCGUCUUU--UGCCGUCuuUa -5'
13401 3' -51.2 NC_003409.1 + 131346 0.68 0.951732
Target:  5'- gGCCGcGUUGCAGAAcACgGGCuuuGAGGUg -3'
miRNA:   3'- gUGGC-CAGCGUCUUuUG-CCGu--CUUUA- -5'
13401 3' -51.2 NC_003409.1 + 16390 0.68 0.947327
Target:  5'- aGCCGGUgCGCAGu-GugGuGUAGAAAg -3'
miRNA:   3'- gUGGCCA-GCGUCuuUugC-CGUCUUUa -5'
13401 3' -51.2 NC_003409.1 + 133099 0.68 0.947327
Target:  5'- gGCCGGUCcggauGCcguGAAGGCGGCGGu--- -3'
miRNA:   3'- gUGGCCAG-----CGu--CUUUUGCCGUCuuua -5'
13401 3' -51.2 NC_003409.1 + 131819 0.68 0.947327
Target:  5'- gGCCGGcUGCAGggGACuGCAGc--- -3'
miRNA:   3'- gUGGCCaGCGUCuuUUGcCGUCuuua -5'
13401 3' -51.2 NC_003409.1 + 33749 0.69 0.927107
Target:  5'- cCACUGGUaUGCGGAAAAUGGUGGu--- -3'
miRNA:   3'- -GUGGCCA-GCGUCUUUUGCCGUCuuua -5'
13401 3' -51.2 NC_003409.1 + 45507 0.7 0.902679
Target:  5'- --gCGGUgGCGGAccgcucucgcgAGGCGGCGGAGAc -3'
miRNA:   3'- gugGCCAgCGUCU-----------UUUGCCGUCUUUa -5'
13401 3' -51.2 NC_003409.1 + 132955 0.7 0.895922
Target:  5'- gACCGGcCGCGGGAuccGCaGGCAGGu-- -3'
miRNA:   3'- gUGGCCaGCGUCUUu--UG-CCGUCUuua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.