miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13401 5' -51.1 NC_003409.1 + 64608 0.66 0.985077
Target:  5'- aGACCcccacUGUGCUuccUUUUCUGgCCACCu -3'
miRNA:   3'- aUUGGc----ACACGGu--AAAAGAC-GGUGGu -5'
13401 5' -51.1 NC_003409.1 + 113031 0.66 0.983137
Target:  5'- --cCCGgagGCCGguaUCUGCCGCCc -3'
miRNA:   3'- auuGGCacaCGGUaaaAGACGGUGGu -5'
13401 5' -51.1 NC_003409.1 + 68656 0.66 0.983137
Target:  5'- gAACCGag-GCCAUcgcgagugUCgGCCACCAa -3'
miRNA:   3'- aUUGGCacaCGGUAaa------AGaCGGUGGU- -5'
13401 5' -51.1 NC_003409.1 + 87429 0.66 0.981012
Target:  5'- -cGCCGUgGUGCCGgaagUUC-GCaCACCGc -3'
miRNA:   3'- auUGGCA-CACGGUaa--AAGaCG-GUGGU- -5'
13401 5' -51.1 NC_003409.1 + 76574 0.66 0.978693
Target:  5'- -cACCacuauuucUGCCGUUUUCUGCgACCGg -3'
miRNA:   3'- auUGGcac-----ACGGUAAAAGACGgUGGU- -5'
13401 5' -51.1 NC_003409.1 + 36159 0.67 0.970482
Target:  5'- -cGCCGUGUGCgGga-UCuUGCC-CCAg -3'
miRNA:   3'- auUGGCACACGgUaaaAG-ACGGuGGU- -5'
13401 5' -51.1 NC_003409.1 + 132770 0.67 0.967299
Target:  5'- uUGACUGgg-GCC--UUUUUGCCACCGg -3'
miRNA:   3'- -AUUGGCacaCGGuaAAAGACGGUGGU- -5'
13401 5' -51.1 NC_003409.1 + 3256 0.67 0.960221
Target:  5'- -uACgGUGUGa-AUUUUCUGCCACa- -3'
miRNA:   3'- auUGgCACACggUAAAAGACGGUGgu -5'
13401 5' -51.1 NC_003409.1 + 120371 0.67 0.960221
Target:  5'- --cCCGUGUGCCA------GCCGCCu -3'
miRNA:   3'- auuGGCACACGGUaaaagaCGGUGGu -5'
13401 5' -51.1 NC_003409.1 + 45858 0.68 0.947273
Target:  5'- -cGCCGcgacgggcgacuUGUGCCAUUccucauaUUCUGCCAUgAg -3'
miRNA:   3'- auUGGC------------ACACGGUAA-------AAGACGGUGgU- -5'
13401 5' -51.1 NC_003409.1 + 22593 0.71 0.842192
Target:  5'- gUGGCCGUGauugagcuaugugcgGCCAgcggucCUGCCACCAu -3'
miRNA:   3'- -AUUGGCACa--------------CGGUaaaa--GACGGUGGU- -5'
13401 5' -51.1 NC_003409.1 + 76441 1.07 0.008055
Target:  5'- gUAACCGUGUGCCAUUUUCUGCCACCAc -3'
miRNA:   3'- -AUUGGCACACGGUAAAAGACGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.