miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13404 5' -57.4 NC_003409.1 + 102937 0.66 0.837199
Target:  5'- -aCAGaGCUCUGuuuuucugcaGGCGGUUUUCCAGAa -3'
miRNA:   3'- cgGUCgCGAGAC----------CUGUCGGAAGGUCU- -5'
13404 5' -57.4 NC_003409.1 + 43529 0.66 0.828839
Target:  5'- -aCGGC-CUCUGGGCAGCagguggCCGGc -3'
miRNA:   3'- cgGUCGcGAGACCUGUCGgaa---GGUCu -5'
13404 5' -57.4 NC_003409.1 + 41699 0.66 0.820299
Target:  5'- gGCCAcggacGCGCggacUCUGGGCAGCuCUacagugUCAGAc -3'
miRNA:   3'- -CGGU-----CGCG----AGACCUGUCG-GAa-----GGUCU- -5'
13404 5' -57.4 NC_003409.1 + 119948 0.66 0.820299
Target:  5'- cGCCGGCGC-CUGGcacGCGGCCa------ -3'
miRNA:   3'- -CGGUCGCGaGACC---UGUCGGaaggucu -5'
13404 5' -57.4 NC_003409.1 + 33268 0.66 0.820299
Target:  5'- gGCCAgcuGCGCUUcGGACGGag--CCGGAa -3'
miRNA:   3'- -CGGU---CGCGAGaCCUGUCggaaGGUCU- -5'
13404 5' -57.4 NC_003409.1 + 66930 0.66 0.811585
Target:  5'- cGCUgaGGCGCUguccucCUGGACGGCCgaaUCUcacugGGAg -3'
miRNA:   3'- -CGG--UCGCGA------GACCUGUCGGa--AGG-----UCU- -5'
13404 5' -57.4 NC_003409.1 + 109911 0.66 0.811585
Target:  5'- gGCgAGCGC-CUGGuCGGCCaggCgCAGGa -3'
miRNA:   3'- -CGgUCGCGaGACCuGUCGGaa-G-GUCU- -5'
13404 5' -57.4 NC_003409.1 + 98005 0.66 0.811585
Target:  5'- -aCGGCGCcCUGGcACgAGCCcugUCCAGu -3'
miRNA:   3'- cgGUCGCGaGACC-UG-UCGGa--AGGUCu -5'
13404 5' -57.4 NC_003409.1 + 49531 0.66 0.802707
Target:  5'- gGCUGGCGCUCagGGu--GCCggagUUCAGAg -3'
miRNA:   3'- -CGGUCGCGAGa-CCuguCGGa---AGGUCU- -5'
13404 5' -57.4 NC_003409.1 + 128682 0.66 0.802707
Target:  5'- uGCCGGgGUugccauuacUCUGGugGGCCUauUUgGGAu -3'
miRNA:   3'- -CGGUCgCG---------AGACCugUCGGA--AGgUCU- -5'
13404 5' -57.4 NC_003409.1 + 109275 0.67 0.784491
Target:  5'- -gCGGUGUUCcGGGCAGaCCccgUCCAGGc -3'
miRNA:   3'- cgGUCGCGAGaCCUGUC-GGa--AGGUCU- -5'
13404 5' -57.4 NC_003409.1 + 12013 0.67 0.784491
Target:  5'- aGCCAGC---CUGGAgGGCCUgCUGGAg -3'
miRNA:   3'- -CGGUCGcgaGACCUgUCGGAaGGUCU- -5'
13404 5' -57.4 NC_003409.1 + 79434 0.67 0.765722
Target:  5'- cGCCucGGUGaccCUCUGGAaGGCUgUCCAGAg -3'
miRNA:   3'- -CGG--UCGC---GAGACCUgUCGGaAGGUCU- -5'
13404 5' -57.4 NC_003409.1 + 113847 0.67 0.746472
Target:  5'- -aCGGUGCggauUCUGGGC-GCCUUUCAGu -3'
miRNA:   3'- cgGUCGCG----AGACCUGuCGGAAGGUCu -5'
13404 5' -57.4 NC_003409.1 + 52963 0.67 0.736691
Target:  5'- aGCCAGUGUguuUCUGuGCGGCCcgucCCGGGg -3'
miRNA:   3'- -CGGUCGCG---AGACcUGUCGGaa--GGUCU- -5'
13404 5' -57.4 NC_003409.1 + 102289 0.68 0.716862
Target:  5'- aCCGGUGC-CUGGGCAGCUacagUCCc-- -3'
miRNA:   3'- cGGUCGCGaGACCUGUCGGa---AGGucu -5'
13404 5' -57.4 NC_003409.1 + 96632 0.68 0.716862
Target:  5'- uCCAGCGUgg-GGACAGCUggcgUUCUGGGg -3'
miRNA:   3'- cGGUCGCGagaCCUGUCGG----AAGGUCU- -5'
13404 5' -57.4 NC_003409.1 + 27693 0.68 0.716862
Target:  5'- cGCCGGCGUcgCUGuGGC-GCCUUUguGGg -3'
miRNA:   3'- -CGGUCGCGa-GAC-CUGuCGGAAGguCU- -5'
13404 5' -57.4 NC_003409.1 + 24610 0.68 0.676399
Target:  5'- uGCCGGgGCUcCUGGGguGCUg-CCGGGg -3'
miRNA:   3'- -CGGUCgCGA-GACCUguCGGaaGGUCU- -5'
13404 5' -57.4 NC_003409.1 + 24570 0.68 0.676399
Target:  5'- uGCCGGgGCUcCUGGGguGCUg-CCGGGg -3'
miRNA:   3'- -CGGUCgCGA-GACCUguCGGaaGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.