Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13406 | 5' | -44.3 | NC_003409.1 | + | 6710 | 0.71 | 0.998699 |
Target: 5'- --uGGACACUaaaagUCUGGcccucACUACAGGg -3' miRNA: 3'- aauCUUGUGA-----AGACCuua--UGAUGUCC- -5' |
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13406 | 5' | -44.3 | NC_003409.1 | + | 6822 | 0.71 | 0.998409 |
Target: 5'- aUUGGAGCACUUUUGGAAaACgugGCuGa -3' miRNA: 3'- -AAUCUUGUGAAGACCUUaUGa--UGuCc -5' |
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13406 | 5' | -44.3 | NC_003409.1 | + | 13852 | 0.7 | 0.999454 |
Target: 5'- -aAGAGCAgUcaggucCUGGAccucAUACUGCGGGa -3' miRNA: 3'- aaUCUUGUgAa-----GACCU----UAUGAUGUCC- -5' |
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13406 | 5' | -44.3 | NC_003409.1 | + | 24459 | 0.7 | 0.999146 |
Target: 5'- cUGGggUGCUgccggggcucCUGGggUGCUGcCGGGg -3' miRNA: 3'- aAUCuuGUGAa---------GACCuuAUGAU-GUCC- -5' |
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13406 | 5' | -44.3 | NC_003409.1 | + | 24499 | 0.7 | 0.999146 |
Target: 5'- cUGGggUGCUgccggggcucCUGGggUGCUGcCGGGg -3' miRNA: 3'- aAUCuuGUGAa---------GACCuuAUGAU-GUCC- -5' |
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13406 | 5' | -44.3 | NC_003409.1 | + | 24539 | 0.7 | 0.999146 |
Target: 5'- cUGGggUGCUgccggggcucCUGGggUGCUGcCGGGg -3' miRNA: 3'- aAUCuuGUGAa---------GACCuuAUGAU-GUCC- -5' |
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13406 | 5' | -44.3 | NC_003409.1 | + | 24579 | 0.7 | 0.999146 |
Target: 5'- cUGGggUGCUgccggggcucCUGGggUGCUGcCGGGg -3' miRNA: 3'- aAUCuuGUGAa---------GACCuuAUGAU-GUCC- -5' |
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13406 | 5' | -44.3 | NC_003409.1 | + | 24619 | 0.7 | 0.999146 |
Target: 5'- cUGGggUGCUgccggggcucCUGGggUGCUGcCGGGg -3' miRNA: 3'- aAUCuuGUGAa---------GACCuuAUGAU-GUCC- -5' |
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13406 | 5' | -44.3 | NC_003409.1 | + | 24659 | 0.7 | 0.999146 |
Target: 5'- cUGGggUGCUgccggggcucCUGGggUGCUGcCGGGg -3' miRNA: 3'- aAUCuuGUGAa---------GACCuuAUGAU-GUCC- -5' |
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13406 | 5' | -44.3 | NC_003409.1 | + | 24699 | 0.7 | 0.999146 |
Target: 5'- cUGGggUGCUgccggggcucCUGGggUGCUGcCGGGg -3' miRNA: 3'- aAUCuuGUGAa---------GACCuuAUGAU-GUCC- -5' |
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13406 | 5' | -44.3 | NC_003409.1 | + | 24737 | 0.72 | 0.996647 |
Target: 5'- -gGGGGCGCgccggggcucCUGGggUGCUGcCGGGg -3' miRNA: 3'- aaUCUUGUGaa--------GACCuuAUGAU-GUCC- -5' |
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13406 | 5' | -44.3 | NC_003409.1 | + | 32004 | 0.67 | 0.999981 |
Target: 5'- -gGGAcCGCUgggagUCUGGGAUaACUcGCGGGg -3' miRNA: 3'- aaUCUuGUGA-----AGACCUUA-UGA-UGUCC- -5' |
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13406 | 5' | -44.3 | NC_003409.1 | + | 36070 | 0.67 | 0.999981 |
Target: 5'- aUUAGAACGC--CUGuGAccguggACUACAGGa -3' miRNA: 3'- -AAUCUUGUGaaGAC-CUua----UGAUGUCC- -5' |
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13406 | 5' | -44.3 | NC_003409.1 | + | 83291 | 1.09 | 0.034056 |
Target: 5'- uUUAGAACACUUCUGGAAUACUACAGGc -3' miRNA: 3'- -AAUCUUGUGAAGACCUUAUGAUGUCC- -5' |
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13406 | 5' | -44.3 | NC_003409.1 | + | 89816 | 0.67 | 0.999963 |
Target: 5'- cUAGGGCugUUCUGGAuguuuuuaauGUggcacaauaucGCaUACAGGg -3' miRNA: 3'- aAUCUUGugAAGACCU----------UA-----------UG-AUGUCC- -5' |
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13406 | 5' | -44.3 | NC_003409.1 | + | 94111 | 0.66 | 0.999995 |
Target: 5'- --uGGACGCUUCUGGGGg---GUAGGg -3' miRNA: 3'- aauCUUGUGAAGACCUUaugaUGUCC- -5' |
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13406 | 5' | -44.3 | NC_003409.1 | + | 109790 | 0.76 | 0.965913 |
Target: 5'- ------gGCUUCUGGAcUGCUGCGGGu -3' miRNA: 3'- aaucuugUGAAGACCUuAUGAUGUCC- -5' |
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13406 | 5' | -44.3 | NC_003409.1 | + | 116990 | 0.66 | 0.999998 |
Target: 5'- --cGGGCACUacaUCUGGGAgaaACUGCgcuuAGGc -3' miRNA: 3'- aauCUUGUGA---AGACCUUa--UGAUG----UCC- -5' |
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13406 | 5' | -44.3 | NC_003409.1 | + | 118491 | 0.72 | 0.99529 |
Target: 5'- -gGGGAC-CgcgCcGGggUACUGCAGGg -3' miRNA: 3'- aaUCUUGuGaa-GaCCuuAUGAUGUCC- -5' |
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13406 | 5' | -44.3 | NC_003409.1 | + | 118858 | 0.67 | 0.999981 |
Target: 5'- cUUGGcuAACACggCUGGAGUgGCgguggGCGGGg -3' miRNA: 3'- -AAUC--UUGUGaaGACCUUA-UGa----UGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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