Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13407 | 3' | -45.4 | NC_003409.1 | + | 26490 | 0.66 | 0.999975 |
Target: 5'- -----aAAGGGgaGGUgAGCAGAGUGc -3' miRNA: 3'- guaaugUUCUCgaUCAgUCGUCUUAC- -5' |
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13407 | 3' | -45.4 | NC_003409.1 | + | 124803 | 0.66 | 0.999965 |
Target: 5'- ---aGCAGGAGUUAGaggAGCAGGAg- -3' miRNA: 3'- guaaUGUUCUCGAUCag-UCGUCUUac -5' |
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13407 | 3' | -45.4 | NC_003409.1 | + | 125823 | 0.66 | 0.999965 |
Target: 5'- --cUGCAGGAGCcacaaCAGCAGGAg- -3' miRNA: 3'- guaAUGUUCUCGauca-GUCGUCUUac -5' |
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13407 | 3' | -45.4 | NC_003409.1 | + | 125223 | 0.66 | 0.999965 |
Target: 5'- ---aGCAGgauGAGC-AGgagCAGCAGGAUGa -3' miRNA: 3'- guaaUGUU---CUCGaUCa--GUCGUCUUAC- -5' |
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13407 | 3' | -45.4 | NC_003409.1 | + | 87042 | 0.66 | 0.999965 |
Target: 5'- -uUUACcgacAGAGCUGGagCGGCGGGAg- -3' miRNA: 3'- guAAUGu---UCUCGAUCa-GUCGUCUUac -5' |
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13407 | 3' | -45.4 | NC_003409.1 | + | 26806 | 0.66 | 0.999965 |
Target: 5'- --aUACAgauguAGAGCUAa--AGCAGggUGg -3' miRNA: 3'- guaAUGU-----UCUCGAUcagUCGUCuuAC- -5' |
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13407 | 3' | -45.4 | NC_003409.1 | + | 125013 | 0.66 | 0.999965 |
Target: 5'- ---aGCAGGAGUUAGaggAGCAGGAg- -3' miRNA: 3'- guaaUGUUCUCGAUCag-UCGUCUUac -5' |
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13407 | 3' | -45.4 | NC_003409.1 | + | 124971 | 0.66 | 0.999965 |
Target: 5'- ---aGCAGGAGUUAGaggAGCAGGAg- -3' miRNA: 3'- guaaUGUUCUCGAUCag-UCGUCUUac -5' |
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13407 | 3' | -45.4 | NC_003409.1 | + | 124950 | 0.66 | 0.999965 |
Target: 5'- ---aGCAGGAGUUAGaggAGCAGGAg- -3' miRNA: 3'- guaaUGUUCUCGAUCag-UCGUCUUac -5' |
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13407 | 3' | -45.4 | NC_003409.1 | + | 124929 | 0.66 | 0.999965 |
Target: 5'- ---aGCAGGAGUUAGaggAGCAGGAg- -3' miRNA: 3'- guaaUGUUCUCGAUCag-UCGUCUUac -5' |
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13407 | 3' | -45.4 | NC_003409.1 | + | 124908 | 0.66 | 0.999965 |
Target: 5'- ---aGCAGGAGUUAGaggAGCAGGAg- -3' miRNA: 3'- guaaUGUUCUCGAUCag-UCGUCUUac -5' |
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13407 | 3' | -45.4 | NC_003409.1 | + | 124887 | 0.66 | 0.999965 |
Target: 5'- ---aGCAGGAGUUAGaggAGCAGGAg- -3' miRNA: 3'- guaaUGUUCUCGAUCag-UCGUCUUac -5' |
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13407 | 3' | -45.4 | NC_003409.1 | + | 124866 | 0.66 | 0.999965 |
Target: 5'- ---aGCAGGAGUUAGaggAGCAGGAg- -3' miRNA: 3'- guaaUGUUCUCGAUCag-UCGUCUUac -5' |
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13407 | 3' | -45.4 | NC_003409.1 | + | 124845 | 0.66 | 0.999965 |
Target: 5'- ---aGCAGGAGUUAGaggAGCAGGAg- -3' miRNA: 3'- guaaUGUUCUCGAUCag-UCGUCUUac -5' |
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13407 | 3' | -45.4 | NC_003409.1 | + | 124824 | 0.66 | 0.999965 |
Target: 5'- ---aGCAGGAGUUAGaggAGCAGGAg- -3' miRNA: 3'- guaaUGUUCUCGAUCag-UCGUCUUac -5' |
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13407 | 3' | -45.4 | NC_003409.1 | + | 125540 | 0.66 | 0.999913 |
Target: 5'- ---aGCAgcGGAGCcacAG-CAGCAGGAUGa -3' miRNA: 3'- guaaUGU--UCUCGa--UCaGUCGUCUUAC- -5' |
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13407 | 3' | -45.4 | NC_003409.1 | + | 64497 | 0.67 | 0.999885 |
Target: 5'- --aUACGAGAGCUGuGUCuuggcGUAGAGg- -3' miRNA: 3'- guaAUGUUCUCGAU-CAGu----CGUCUUac -5' |
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13407 | 3' | -45.4 | NC_003409.1 | + | 125732 | 0.67 | 0.999849 |
Target: 5'- ---aGCAGGAGCcacAG-CAGCAGGAg- -3' miRNA: 3'- guaaUGUUCUCGa--UCaGUCGUCUUac -5' |
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13407 | 3' | -45.4 | NC_003409.1 | + | 125762 | 0.67 | 0.999849 |
Target: 5'- ---aGCAGGAGCcacAG-CAGCAGGAg- -3' miRNA: 3'- guaaUGUUCUCGa--UCaGUCGUCUUac -5' |
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13407 | 3' | -45.4 | NC_003409.1 | + | 125792 | 0.67 | 0.999849 |
Target: 5'- ---aGCAGGAGCcacAG-CAGCAGGAg- -3' miRNA: 3'- guaaUGUUCUCGa--UCaGUCGUCUUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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