miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13407 3' -45.4 NC_003409.1 + 84110 1.09 0.024614
Target:  5'- cCAUUACAAGAGCUAGUCAGCAGAAUGc -3'
miRNA:   3'- -GUAAUGUUCUCGAUCAGUCGUCUUAC- -5'
13407 3' -45.4 NC_003409.1 + 134093 0.74 0.962833
Target:  5'- --cUGCAAGAGCUAGgauuGCAGgAGUGg -3'
miRNA:   3'- guaAUGUUCUCGAUCagu-CGUC-UUAC- -5'
13407 3' -45.4 NC_003409.1 + 85295 0.73 0.972952
Target:  5'- aCAUUGCGGcgcGAGCUAGUCugguuGCGGGAc- -3'
miRNA:   3'- -GUAAUGUU---CUCGAUCAGu----CGUCUUac -5'
13407 3' -45.4 NC_003409.1 + 40612 0.7 0.996672
Target:  5'- uGUUACGAGuuccggacgugaaGGCUAGUCuAGUAGAGg- -3'
miRNA:   3'- gUAAUGUUC-------------UCGAUCAG-UCGUCUUac -5'
13407 3' -45.4 NC_003409.1 + 125178 0.69 0.998735
Target:  5'- ---aGCAGGAGCagcAGgaugagcagCAGCAGGAUGa -3'
miRNA:   3'- guaaUGUUCUCGa--UCa--------GUCGUCUUAC- -5'
13407 3' -45.4 NC_003409.1 + 114781 0.68 0.999336
Target:  5'- ---cGCAGcGAGCcGGUUuGCAGAGUGg -3'
miRNA:   3'- guaaUGUU-CUCGaUCAGuCGUCUUAC- -5'
13407 3' -45.4 NC_003409.1 + 125702 0.67 0.999849
Target:  5'- ---aGCAGGAGCcacAG-CAGCAGGAg- -3'
miRNA:   3'- guaaUGUUCUCGa--UCaGUCGUCUUac -5'
13407 3' -45.4 NC_003409.1 + 125732 0.67 0.999849
Target:  5'- ---aGCAGGAGCcacAG-CAGCAGGAg- -3'
miRNA:   3'- guaaUGUUCUCGa--UCaGUCGUCUUac -5'
13407 3' -45.4 NC_003409.1 + 125762 0.67 0.999849
Target:  5'- ---aGCAGGAGCcacAG-CAGCAGGAg- -3'
miRNA:   3'- guaaUGUUCUCGa--UCaGUCGUCUUac -5'
13407 3' -45.4 NC_003409.1 + 125792 0.67 0.999849
Target:  5'- ---aGCAGGAGCcacAG-CAGCAGGAg- -3'
miRNA:   3'- guaaUGUUCUCGa--UCaGUCGUCUUac -5'
13407 3' -45.4 NC_003409.1 + 111204 0.67 0.999849
Target:  5'- aGUUGCGGGAGUgGGUgCGGUAG-GUGg -3'
miRNA:   3'- gUAAUGUUCUCGaUCA-GUCGUCuUAC- -5'
13407 3' -45.4 NC_003409.1 + 125849 0.67 0.999849
Target:  5'- ---aGCAGGAGCcacAG-CAGCAGGAg- -3'
miRNA:   3'- guaaUGUUCUCGa--UCaGUCGUCUUac -5'
13407 3' -45.4 NC_003409.1 + 125963 0.67 0.999849
Target:  5'- ---aGCAGGAGCcacAG-CAGCAGGAg- -3'
miRNA:   3'- guaaUGUUCUCGa--UCaGUCGUCUUac -5'
13407 3' -45.4 NC_003409.1 + 125906 0.67 0.999849
Target:  5'- ---aGCAGGAGCcacAG-CAGCAGGAg- -3'
miRNA:   3'- guaaUGUUCUCGa--UCaGUCGUCUUac -5'
13407 3' -45.4 NC_003409.1 + 64497 0.67 0.999885
Target:  5'- --aUACGAGAGCUGuGUCuuggcGUAGAGg- -3'
miRNA:   3'- guaAUGUUCUCGAU-CAGu----CGUCUUac -5'
13407 3' -45.4 NC_003409.1 + 125540 0.66 0.999913
Target:  5'- ---aGCAgcGGAGCcacAG-CAGCAGGAUGa -3'
miRNA:   3'- guaaUGU--UCUCGa--UCaGUCGUCUUAC- -5'
13407 3' -45.4 NC_003409.1 + 124929 0.66 0.999965
Target:  5'- ---aGCAGGAGUUAGaggAGCAGGAg- -3'
miRNA:   3'- guaaUGUUCUCGAUCag-UCGUCUUac -5'
13407 3' -45.4 NC_003409.1 + 125823 0.66 0.999965
Target:  5'- --cUGCAGGAGCcacaaCAGCAGGAg- -3'
miRNA:   3'- guaAUGUUCUCGauca-GUCGUCUUac -5'
13407 3' -45.4 NC_003409.1 + 125223 0.66 0.999965
Target:  5'- ---aGCAGgauGAGC-AGgagCAGCAGGAUGa -3'
miRNA:   3'- guaaUGUU---CUCGaUCa--GUCGUCUUAC- -5'
13407 3' -45.4 NC_003409.1 + 87042 0.66 0.999965
Target:  5'- -uUUACcgacAGAGCUGGagCGGCGGGAg- -3'
miRNA:   3'- guAAUGu---UCUCGAUCa-GUCGUCUUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.