Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13408 | 5' | -53 | NC_003409.1 | + | 43681 | 0.66 | 0.959727 |
Target: 5'- cGUUagCUACGgAAGGgCGAUGAGAa-- -3' miRNA: 3'- -CAGg-GAUGCgUUCCgGCUACUCUaag -5' |
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13408 | 5' | -53 | NC_003409.1 | + | 80917 | 0.66 | 0.955878 |
Target: 5'- uUCCCUGCGUGAGGCCa--------- -3' miRNA: 3'- cAGGGAUGCGUUCCGGcuacucuaag -5' |
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13408 | 5' | -53 | NC_003409.1 | + | 108485 | 0.66 | 0.951786 |
Target: 5'- -cUCCUGCaGCGAgcGGUCGAUGAGcugUCa -3' miRNA: 3'- caGGGAUG-CGUU--CCGGCUACUCua-AG- -5' |
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13408 | 5' | -53 | NC_003409.1 | + | 133446 | 0.67 | 0.932918 |
Target: 5'- gGUCCCaggGCcgguucggugGCAuacAGGCCGGUGAGGg-- -3' miRNA: 3'- -CAGGGa--UG----------CGU---UCCGGCUACUCUaag -5' |
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13408 | 5' | -53 | NC_003409.1 | + | 32601 | 0.67 | 0.927564 |
Target: 5'- gGUCCUgggACGCAAGGUuccUGcgGAGGUg- -3' miRNA: 3'- -CAGGGa--UGCGUUCCG---GCuaCUCUAag -5' |
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13408 | 5' | -53 | NC_003409.1 | + | 87387 | 0.68 | 0.903588 |
Target: 5'- -aCCCggGCGCGGGGgCGcugggcgguUGAGGUUCg -3' miRNA: 3'- caGGGa-UGCGUUCCgGCu--------ACUCUAAG- -5' |
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13408 | 5' | -53 | NC_003409.1 | + | 84258 | 1.1 | 0.00366 |
Target: 5'- gGUCCCUACGCAAGGCCGAUGAGAUUCg -3' miRNA: 3'- -CAGGGAUGCGUUCCGGCUACUCUAAG- -5' |
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13408 | 5' | -53 | NC_003409.1 | + | 104812 | 0.72 | 0.730266 |
Target: 5'- aGUCCCUGCGCAauggugccucacuAGGCgCGG-GGGAUa- -3' miRNA: 3'- -CAGGGAUGCGU-------------UCCG-GCUaCUCUAag -5' |
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13408 | 5' | -53 | NC_003409.1 | + | 52029 | 0.71 | 0.780822 |
Target: 5'- -aCCCUGCGCGgagaAGGCCGGUcAGGa-- -3' miRNA: 3'- caGGGAUGCGU----UCCGGCUAcUCUaag -5' |
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13408 | 5' | -53 | NC_003409.1 | + | 110079 | 0.69 | 0.875611 |
Target: 5'- cGUUCCUGCGCcuGGCCGAccAGGc-- -3' miRNA: 3'- -CAGGGAUGCGuuCCGGCUacUCUaag -5' |
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13408 | 5' | -53 | NC_003409.1 | + | 101724 | 0.67 | 0.927014 |
Target: 5'- uGUUCC-ACGCAugugaacAGGCCGAUGA--UUCc -3' miRNA: 3'- -CAGGGaUGCGU-------UCCGGCUACUcuAAG- -5' |
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13408 | 5' | -53 | NC_003409.1 | + | 91728 | 0.66 | 0.959727 |
Target: 5'- -cCCCUGCaauGCAAGGUa-AUGAGGUUa -3' miRNA: 3'- caGGGAUG---CGUUCCGgcUACUCUAAg -5' |
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13408 | 5' | -53 | NC_003409.1 | + | 109099 | 0.66 | 0.966718 |
Target: 5'- uGUCCCggagccggcUGCGUcuGGCCGAUGuguAGGUaUCg -3' miRNA: 3'- -CAGGG---------AUGCGuuCCGGCUAC---UCUA-AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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