Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13409 | 5' | -57 | NC_003409.1 | + | 24243 | 0.67 | 0.791603 |
Target: 5'- uUGGaUUUAccCGUaacGAGGAGCCCCGGcAGc -3' miRNA: 3'- uACC-AAGUa-GCG---UUCCUCGGGGCC-UC- -5' |
|||||||
13409 | 5' | -57 | NC_003409.1 | + | 121399 | 0.7 | 0.62185 |
Target: 5'- -cGGUUCGUCGCuuGGA--CCUGGAGg -3' miRNA: 3'- uaCCAAGUAGCGuuCCUcgGGGCCUC- -5' |
|||||||
13409 | 5' | -57 | NC_003409.1 | + | 85006 | 1.06 | 0.002966 |
Target: 5'- gAUGGUUCAUCGCAAGGAGCCCCGGAGc -3' miRNA: 3'- -UACCAAGUAGCGUUCCUCGGGGCCUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home