Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1341 | 3' | -51.6 | NC_001335.1 | + | 7194 | 1.11 | 0.001567 |
Target: 5'- cUGAUCAUCACCGGGAACAGCGAGAACg -3' miRNA: 3'- -ACUAGUAGUGGCCCUUGUCGCUCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 27066 | 0.79 | 0.22782 |
Target: 5'- aGAUCAUCACCGGGAACaacuGGCcaccGGGCa -3' miRNA: 3'- aCUAGUAGUGGCCCUUG----UCGcu--CUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 50751 | 0.75 | 0.399907 |
Target: 5'- -aGUCGUCgGCCGGGGGCGGCGcaccuuGGGCg -3' miRNA: 3'- acUAGUAG-UGGCCCUUGUCGCu-----CUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 19076 | 0.74 | 0.43795 |
Target: 5'- cGGcUCAagaCGCCGGGGuugaucuACGGCGAGAACu -3' miRNA: 3'- aCU-AGUa--GUGGCCCU-------UGUCGCUCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 25774 | 0.73 | 0.480087 |
Target: 5'- aGGUUG-CACCGGGAguuGCAGCGgucGGAACc -3' miRNA: 3'- aCUAGUaGUGGCCCU---UGUCGC---UCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 49015 | 0.72 | 0.533981 |
Target: 5'- cGA-CAUCACCuGGGACGGCGuggcguGGGCa -3' miRNA: 3'- aCUaGUAGUGGcCCUUGUCGCu-----CUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 3098 | 0.71 | 0.578578 |
Target: 5'- aGcgCcUCGCCaaGGcGAGCGGCGGGAGCu -3' miRNA: 3'- aCuaGuAGUGG--CC-CUUGUCGCUCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 23832 | 0.71 | 0.583088 |
Target: 5'- aGAcgAUCACCGGGcucgucggagcuggaGgcGCAGCGGGAGCu -3' miRNA: 3'- aCUagUAGUGGCCC---------------U--UGUCGCUCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 1241 | 0.71 | 0.589867 |
Target: 5'- gGAggCGUCACCGGuGGCGGCGgaaguGGAGCc -3' miRNA: 3'- aCUa-GUAGUGGCCcUUGUCGC-----UCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 20269 | 0.71 | 0.594394 |
Target: 5'- aGGUCGagggcgucgauguguUCACCGGGGACuacacguucccaGGCGAGuACu -3' miRNA: 3'- aCUAGU---------------AGUGGCCCUUG------------UCGCUCuUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 11440 | 0.71 | 0.601195 |
Target: 5'- gGGUCGUucaCGCCGaGGAACGGCGuGGuGCg -3' miRNA: 3'- aCUAGUA---GUGGC-CCUUGUCGCuCU-UG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 41120 | 0.71 | 0.620511 |
Target: 5'- cGAUCAaCGCUGGGAaguccucguACAGCGcgucauacgcggccAGAGCg -3' miRNA: 3'- aCUAGUaGUGGCCCU---------UGUCGC--------------UCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 7883 | 0.7 | 0.669387 |
Target: 5'- gUGAUCcgGUCACCGcGcuGCAGCG-GAGCg -3' miRNA: 3'- -ACUAG--UAGUGGC-CcuUGUCGCuCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 3606 | 0.69 | 0.70313 |
Target: 5'- uUGAaguUCAgugucCACgcaGGGAACAGCGAGAc- -3' miRNA: 3'- -ACU---AGUa----GUGg--CCCUUGUCGCUCUug -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 37812 | 0.69 | 0.724177 |
Target: 5'- cGAUaCAUCgACUGGGAugGugcucacGUGAGAACg -3' miRNA: 3'- aCUA-GUAG-UGGCCCUugU-------CGCUCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 32694 | 0.68 | 0.747024 |
Target: 5'- gGAUCcgCGCCGGccAACGGCGGcGGCg -3' miRNA: 3'- aCUAGuaGUGGCCc-UUGUCGCUcUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 32333 | 0.68 | 0.768274 |
Target: 5'- aGGUCA--GCCaGGGGGCAGCGA-AGCc -3' miRNA: 3'- aCUAGUagUGG-CCCUUGUCGCUcUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 31051 | 0.68 | 0.788925 |
Target: 5'- gGAUC-UCGCCGaGAacuACGGCGuGAACc -3' miRNA: 3'- aCUAGuAGUGGCcCU---UGUCGCuCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 22936 | 0.68 | 0.78994 |
Target: 5'- gGAccCAUaGCCGGGugugcgaaccucccuGCGGCGGGAACa -3' miRNA: 3'- aCUa-GUAgUGGCCCu--------------UGUCGCUCUUG- -5' |
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1341 | 3' | -51.6 | NC_001335.1 | + | 12327 | 0.67 | 0.836377 |
Target: 5'- uUGA-CAUcCACCGGGAGgGGgcuccuuCGGGAGCc -3' miRNA: 3'- -ACUaGUA-GUGGCCCUUgUC-------GCUCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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