miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1341 3' -51.6 NC_001335.1 + 7194 1.11 0.001567
Target:  5'- cUGAUCAUCACCGGGAACAGCGAGAACg -3'
miRNA:   3'- -ACUAGUAGUGGCCCUUGUCGCUCUUG- -5'
1341 3' -51.6 NC_001335.1 + 27066 0.79 0.22782
Target:  5'- aGAUCAUCACCGGGAACaacuGGCcaccGGGCa -3'
miRNA:   3'- aCUAGUAGUGGCCCUUG----UCGcu--CUUG- -5'
1341 3' -51.6 NC_001335.1 + 50751 0.75 0.399907
Target:  5'- -aGUCGUCgGCCGGGGGCGGCGcaccuuGGGCg -3'
miRNA:   3'- acUAGUAG-UGGCCCUUGUCGCu-----CUUG- -5'
1341 3' -51.6 NC_001335.1 + 19076 0.74 0.43795
Target:  5'- cGGcUCAagaCGCCGGGGuugaucuACGGCGAGAACu -3'
miRNA:   3'- aCU-AGUa--GUGGCCCU-------UGUCGCUCUUG- -5'
1341 3' -51.6 NC_001335.1 + 25774 0.73 0.480087
Target:  5'- aGGUUG-CACCGGGAguuGCAGCGgucGGAACc -3'
miRNA:   3'- aCUAGUaGUGGCCCU---UGUCGC---UCUUG- -5'
1341 3' -51.6 NC_001335.1 + 49015 0.72 0.533981
Target:  5'- cGA-CAUCACCuGGGACGGCGuggcguGGGCa -3'
miRNA:   3'- aCUaGUAGUGGcCCUUGUCGCu-----CUUG- -5'
1341 3' -51.6 NC_001335.1 + 3098 0.71 0.578578
Target:  5'- aGcgCcUCGCCaaGGcGAGCGGCGGGAGCu -3'
miRNA:   3'- aCuaGuAGUGG--CC-CUUGUCGCUCUUG- -5'
1341 3' -51.6 NC_001335.1 + 23832 0.71 0.583088
Target:  5'- aGAcgAUCACCGGGcucgucggagcuggaGgcGCAGCGGGAGCu -3'
miRNA:   3'- aCUagUAGUGGCCC---------------U--UGUCGCUCUUG- -5'
1341 3' -51.6 NC_001335.1 + 1241 0.71 0.589867
Target:  5'- gGAggCGUCACCGGuGGCGGCGgaaguGGAGCc -3'
miRNA:   3'- aCUa-GUAGUGGCCcUUGUCGC-----UCUUG- -5'
1341 3' -51.6 NC_001335.1 + 20269 0.71 0.594394
Target:  5'- aGGUCGagggcgucgauguguUCACCGGGGACuacacguucccaGGCGAGuACu -3'
miRNA:   3'- aCUAGU---------------AGUGGCCCUUG------------UCGCUCuUG- -5'
1341 3' -51.6 NC_001335.1 + 11440 0.71 0.601195
Target:  5'- gGGUCGUucaCGCCGaGGAACGGCGuGGuGCg -3'
miRNA:   3'- aCUAGUA---GUGGC-CCUUGUCGCuCU-UG- -5'
1341 3' -51.6 NC_001335.1 + 41120 0.71 0.620511
Target:  5'- cGAUCAaCGCUGGGAaguccucguACAGCGcgucauacgcggccAGAGCg -3'
miRNA:   3'- aCUAGUaGUGGCCCU---------UGUCGC--------------UCUUG- -5'
1341 3' -51.6 NC_001335.1 + 7883 0.7 0.669387
Target:  5'- gUGAUCcgGUCACCGcGcuGCAGCG-GAGCg -3'
miRNA:   3'- -ACUAG--UAGUGGC-CcuUGUCGCuCUUG- -5'
1341 3' -51.6 NC_001335.1 + 3606 0.69 0.70313
Target:  5'- uUGAaguUCAgugucCACgcaGGGAACAGCGAGAc- -3'
miRNA:   3'- -ACU---AGUa----GUGg--CCCUUGUCGCUCUug -5'
1341 3' -51.6 NC_001335.1 + 37812 0.69 0.724177
Target:  5'- cGAUaCAUCgACUGGGAugGugcucacGUGAGAACg -3'
miRNA:   3'- aCUA-GUAG-UGGCCCUugU-------CGCUCUUG- -5'
1341 3' -51.6 NC_001335.1 + 32694 0.68 0.747024
Target:  5'- gGAUCcgCGCCGGccAACGGCGGcGGCg -3'
miRNA:   3'- aCUAGuaGUGGCCc-UUGUCGCUcUUG- -5'
1341 3' -51.6 NC_001335.1 + 32333 0.68 0.768274
Target:  5'- aGGUCA--GCCaGGGGGCAGCGA-AGCc -3'
miRNA:   3'- aCUAGUagUGG-CCCUUGUCGCUcUUG- -5'
1341 3' -51.6 NC_001335.1 + 31051 0.68 0.788925
Target:  5'- gGAUC-UCGCCGaGAacuACGGCGuGAACc -3'
miRNA:   3'- aCUAGuAGUGGCcCU---UGUCGCuCUUG- -5'
1341 3' -51.6 NC_001335.1 + 22936 0.68 0.78994
Target:  5'- gGAccCAUaGCCGGGugugcgaaccucccuGCGGCGGGAACa -3'
miRNA:   3'- aCUa-GUAgUGGCCCu--------------UGUCGCUCUUG- -5'
1341 3' -51.6 NC_001335.1 + 12327 0.67 0.836377
Target:  5'- uUGA-CAUcCACCGGGAGgGGgcuccuuCGGGAGCc -3'
miRNA:   3'- -ACUaGUA-GUGGCCCUUgUC-------GCUCUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.