miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1341 5' -62.3 NC_001335.1 + 26648 0.66 0.369032
Target:  5'- cGGUCCccGGCUGAU--CCGCGugGa- -3'
miRNA:   3'- aCCAGGa-CCGACUGccGGCGCugCca -5'
1341 5' -62.3 NC_001335.1 + 4611 0.66 0.36076
Target:  5'- gGGUCCacgacaUGGCccGCGcUCGCGACGGUc -3'
miRNA:   3'- aCCAGG------ACCGacUGCcGGCGCUGCCA- -5'
1341 5' -62.3 NC_001335.1 + 38247 0.67 0.313887
Target:  5'- gUGGUcgcCCUGGCgucacugGACGGUagcUGCGAucCGGUa -3'
miRNA:   3'- -ACCA---GGACCGa------CUGCCG---GCGCU--GCCA- -5'
1341 5' -62.3 NC_001335.1 + 11198 0.68 0.278463
Target:  5'- cGaGUCCUGcGUUcGACccgucucagGGUCGCGGCGGUa -3'
miRNA:   3'- aC-CAGGAC-CGA-CUG---------CCGGCGCUGCCA- -5'
1341 5' -62.3 NC_001335.1 + 43681 0.68 0.27111
Target:  5'- aGGcUCUGGCcGAgGGCCGCGAgaugagccucgaaCGGg -3'
miRNA:   3'- aCCaGGACCGaCUgCCGGCGCU-------------GCCa -5'
1341 5' -62.3 NC_001335.1 + 32696 0.68 0.246297
Target:  5'- gUGGaUCCgcgccGGCcaACGGCgGCGGCGGUg -3'
miRNA:   3'- -ACC-AGGa----CCGacUGCCGgCGCUGCCA- -5'
1341 5' -62.3 NC_001335.1 + 22539 0.69 0.240246
Target:  5'- cUGGUCCUGGUcuggGACGcGCCcgGUGAgGGc -3'
miRNA:   3'- -ACCAGGACCGa---CUGC-CGG--CGCUgCCa -5'
1341 5' -62.3 NC_001335.1 + 2293 0.69 0.222834
Target:  5'- aGGUCgaGGCUGAacuucGCCGCGA-GGUc -3'
miRNA:   3'- aCCAGgaCCGACUgc---CGGCGCUgCCA- -5'
1341 5' -62.3 NC_001335.1 + 5943 0.69 0.217273
Target:  5'- gGGUCg-GGCUGGCcuguGCCGUGgACGGUg -3'
miRNA:   3'- aCCAGgaCCGACUGc---CGGCGC-UGCCA- -5'
1341 5' -62.3 NC_001335.1 + 48364 0.71 0.167958
Target:  5'- gUGGUUC-GGCcGGcCGGCCGCGACaaGGUa -3'
miRNA:   3'- -ACCAGGaCCGaCU-GCCGGCGCUG--CCA- -5'
1341 5' -62.3 NC_001335.1 + 23738 0.81 0.02889
Target:  5'- aUGGcCCUGGCUGACGGCUGgGGCagaGGUg -3'
miRNA:   3'- -ACCaGGACCGACUGCCGGCgCUG---CCA- -5'
1341 5' -62.3 NC_001335.1 + 7156 1.07 0.000289
Target:  5'- cUGGUCCUGGCUGACGGCCGCGACGGUg -3'
miRNA:   3'- -ACCAGGACCGACUGCCGGCGCUGCCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.